Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02113 ATGATGGATTTGAACTTCACCGCCCGGAAACCGCCGCAGACGGCGACGAGGATGGACATAGAACAGATGCCGGAGACTCCACAGCGTGGCTATCACCATCGCCGTTCTCACTCCGATACATCTTTCCGCTTTGCTAATTTCGACGATCTTCTCCTCTTCGATCATCCCGACCACGATTTATCATCTTCCCTTCGTTCTCCCTCGCCGTCGCCGTCTCCGACGCCGGTGGGCGCTCGTATGGCTCTCGATTCCTTCAATTCAAAGTCCCCTGACGACGCCTCTGCCTCGAAACCTAAAGCTAGTAACGATACCTCGGCTTCGGACTTCTTTGGTGCTCACTGCCGGAGTTTGTCGATGGATTCAGACTTCTTCGACGGCTTAGGGATCGCCGGAGACGGCAGCGACGGTGAGGTACTTGGCGGGAGGGTAACGGTCGGGGAGAAGAAGATCGGTCGCCATAGGCATAGCAATTCCATGGATGGCGCTTTGACCTCGTCGTTTGAAGCTGAATCCACCGGCGTAATTGATTGCTCCAAGAAGGCCATGGCACCTGATAAACTCGCTGAGCTTGCTTTGATGGACCCTAAAAGAGCTAAGAGGATCCTGGCGAACAGACAATCTGCTGCACGATCCAAGGAGAGGAAAATACGTTACACAAACGAATTAGAGAAGAAGGTGCAGATGCTTCAATCAGAAGCGACTTCCCTTTCTGCACAGGTCACTGTATTACAGAGAGATACCACTGAATTGACTACTGAAAACAGAGAGCTTAAACTAAGGCTGCAGGCCATGGAGCAACAAGCCCAACTCAGAGATGGTATCACTGAACGAGACATTGAAGGAGGAAGTGCAACGGCTGAAGATAGCTGCAGCTCAATTGCCTGTTGCAAATGGCAGCTCGTTCAACATTGGAGGAGGGGCGCTACCCCCTCAATTCCATACTCTCCAGCCATCCTTGCATCAGTTTGGCAACTCTCAGAATCATCAACAGTAATAGCTACTGCTGGCTATGATGCTCCACCATCACAGCTTCTCCGGAGCATAATCCGCCAATCCGGGTCAGTTATCGATCTTCCTGGAATAGCTTTTCCTCTTTTTCCTGAGTAA 1107 51.31 MMDLNFTARKPPQTATRMDIEQMPETPQRGYHHRRSHSDTSFRFANFDDLLLFDHPDHDLSSSLRSPSPSPSPTPVGARMALDSFNSKSPDDASASKPKASNDTSASDFFGAHCRSLSMDSDFFDGLGIAGDGSDGEVLGGRVTVGEKKIGRHRHSNSMDGALTSSFEAESTGVIDCSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVLQRDTTELTTENRELKLRLQAMEQQAQLRDGITERDIEGGSATAEDSCSSIACCKWQLVQHWRRGATPSIPYSPAILASVWQLSESSTVIATAGYDAPPSQLLRSIIRQSGSVIDLPGIAFPLFPE 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17875949 17881771 - Cp4.1LG01g21150.1 Cpe01g02113 463426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02113 368 SUPERFAMILY Leucine zipper domain 196 251 IPR046347 GO:0003700|GO:0006355
Cpe01g02113 368 CDD bZIP_plant_RF2 197 246 IPR044759 GO:0003700|GO:0006355
Cpe01g02113 368 MobiDBLite consensus disorder prediction 1 37 - -
Cpe01g02113 368 Coils Coil 247 267 - -
Cpe01g02113 368 Coils Coil 219 239 - -
Cpe01g02113 368 Gene3D - 195 272 - -
Cpe01g02113 368 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 7 275 - -
Cpe01g02113 368 SMART brlzneu 192 256 IPR004827 GO:0003700|GO:0006355
Cpe01g02113 368 Pfam bZIP transcription factor 196 254 IPR004827 GO:0003700|GO:0006355
Cpe01g02113 368 MobiDBLite consensus disorder prediction 87 106 - -
Cpe01g02113 368 MobiDBLite consensus disorder prediction 59 106 - -
Cpe01g02113 368 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 194 257 IPR004827 GO:0003700|GO:0006355
Cpe01g02113 368 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02113 Cpe-Chr1:17875949 Cpe02g00891 Cpe-Chr2:6348025 2.87E-100 dispersed
Cpe01g02113 Cpe-Chr1:17875949 Cpe05g01003 Cpe-Chr5:6554341 4.88E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48922 PF00170 bZIP_1 4.60E-07 CL0018 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02113 K20557 - csv:101215277 338.961