Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02117 ATGAGGAGCTTGGTTAGCTATGCAGAAGCAATGGAGGTCCACAAGCCATACATTGCTATGCTGTTCGTTCAGTGTGTGTACTCAGGAATGGCTTTGTTCTCAAAGGCAGCCATTTCTCAAGGCATGAACCCACCCATCTTCGTCTTCTACCGCCAAGCGTTCGCTACCATCGCCATGGCTCCGTTCGCCTTCTTCCTCGAAAGAAAGAAGGCAGTTCCTTTATCCTTCAAGTTTCTCTTCAAAGTGTTCTTGATTTCTCTAAGTGGAATCACCTTGAGTTTAAACCTTTATTACATAGCTATCAACCACATATCAGCAACATTTGCAGCCGCTACAACCAACACGATCCCCGCTATTACACTCCTCTTCGCTCTCCTCTTCAGATATGAAGTGATTTCGGTGAGAAAGATGGAAGGGATAGCGAAATTGGTTGGGGGTGTGATAGGTTTTTCTGGGGCTTTGGTGTATGCTTTTGTGAAGGGTCCAGTGATGAAGTTCATGAATTGGTACCCACAAAACGCTCGTAATTCGTTCGAAGGGTACTCGGGTTCGGAATGGATTAAGGGTTCATTTGTTATGCTTTCAGCCAATATTGCTTGGTCTTTGTGGCTTGTTTTGCAGGGTGTGATCGTGACGGGAATGACGTATTGGCTACAAATATGGACAGTAGAGAAGAAAGGACCAGTTTTCACAGCCATGTTTACACCATTAGCACTAATCATAACAGCAATCTTCTCAGCATTAGTATGGAAGGAAGCCCTTCATTGGGGAAGTGTTGGTGGGGCTATATTGCTGGTGGTGGGGCTTTATTGTGTTCTATGGGGGAAGAACAAAGAAGAAGATATCAAAACTGAAGCAATTGAACAAAGAGTTGATATCAAAGAGGAAACCAATTCAGCCTCCATTTGCTAA 912 44.19 MRSLVSYAEAMEVHKPYIAMLFVQCVYSGMALFSKAAISQGMNPPIFVFYRQAFATIAMAPFAFFLERKKAVPLSFKFLFKVFLISLSGITLSLNLYYIAINHISATFAAATTNTIPAITLLFALLFRYEVISVRKMEGIAKLVGGVIGFSGALVYAFVKGPVMKFMNWYPQNARNSFEGYSGSEWIKGSFVMLSANIAWSLWLVLQGVIVTGMTYWLQIWTVEKKGPVFTAMFTPLALIITAIFSALVWKEALHWGSVGGAILLVVGLYCVLWGKNKEEDIKTEAIEQRVDIKEETNSASIC 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17901936 17904480 + Cp4.1LG01g21100.1 Cpe01g02117 463430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02117 303 PANTHER WAT1-RELATED PROTEIN 208 287 IPR030184 GO:0016021|GO:0022857
Cpe01g02117 303 SUPERFAMILY Multidrug resistance efflux transporter EmrE 193 278 - -
Cpe01g02117 303 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 150 - -
Cpe01g02117 303 PANTHER WAT1-RELATED PROTEIN 208 287 - -
Cpe01g02117 303 PANTHER WAT1-RELATED PROTEIN 13 210 - -
Cpe01g02117 303 Pfam EamA-like transporter family 15 149 IPR000620 GO:0016020|GO:0016021
Cpe01g02117 303 Pfam EamA-like transporter family 202 273 IPR000620 GO:0016020|GO:0016021
Cpe01g02117 303 PANTHER WAT1-RELATED PROTEIN 13 210 IPR030184 GO:0016021|GO:0022857
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02117 - - - cmos:111463975 532.717
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02117 Cpe-Chr1:17901936 Cpe10g00870 Cpe-Chr10:4902433 3.92E-51 dispersed
Cpe10g00352 Cpe-Chr10:2083119 Cpe01g02117 Cpe-Chr1:17901936 3.94E-17 dispersed
Cpe16g00067 Cpe-Chr16:1339802 Cpe01g02117 Cpe-Chr1:17901936 9.24E-22 dispersed
Cpe16g00068 Cpe-Chr16:1346556 Cpe01g02117 Cpe-Chr1:17901936 8.12E-25 dispersed
Cpe01g02117 Cpe-Chr1:17901936 Cpe06g00635 Cpe-Chr6:3930842 2.28E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1380 . . . . . . . . Cmo04g02564 . . . . . . . . Bhi04g01775 . . . Hepe02g2137 . Lcy10g1352 Cla08g00712 Cam08g1139 Cec08g0728 Cco08g0836 Clacu08g0847 . Cre08g0648 . . Cone17ag0785 Cone20ag0379 . . . Cme03g00317 . . . Bda13g01413 . . Bma01g00742 . . . . . . Car04g02357 . Cpe01g02117 . . . . . . . . . . . . . . . Lsi08g00554 . Chy03g00510 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000096 8 10 5 6 7 6 9 8 6 9 4 7 7 13 9 7 7 3 5 7 10 11 6 9 16 8 10 19 10 2 244