Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g02118 | ATGTCATTCCGCAGCATACTTCGTGATGTAAGGGATGGATTTGGAAGCTTATCTCGACGCAGTTTTGAACTGAGGCTGTCTAGCCATTCCAGGGGTAAATCTCATGGACCAGTTCATGAGTTTGATGATGAACCTCTGTTAATCCAAACTAGCCGCTGGGCTAGCCTTCCGCCCGAGTTATTATTGGATGTGGTTCGGAGACTAGAGGCAAGCGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACGTGTGCAAAGAAATCGTCAAAAGTCCTGAGTTCTCCGGGAAAATTACATTCCCCATCGCCTTGAAGCAGCCCGGACCTCGTGATGGTACTATTCAATGCTTCATCAAGAGGAACAAATCTAATTTAACCTATCATCTTTATCTTTGCCTTAGTCCTACTTTACTTGTTGAGAACGGGAAATTTCTTCTTTCTGCAAAAAGAACGAGGAGAACTACTTCGACCGAGTATGTTATATCATTGGCTGCAGACGATATATCGAGATCGAGCAATGGTTATATCGGAAAGCTAAGGTATGCTGCTGGTGCACCTTTAATTTTCAGATCAAATTTTCTGGGAACAAAGTTCATTATATATGATACACAGATTCCTTACAACGGCAACCAAATTCCGACCCTTGGCCGAAGCCGGAGATTCTACTCCAAAAAGGTCTCTCCGAAGGTACCGACGGGTAGCTACAGCATAGCACAGATTGCATACGAGTTGAACGTCTTAGGTACAAGGGGACCCCGGAGGATGCACTGCACTATGTACTCGATCCCGACTTCATCTCTTGAGCCAGATTCCTCCGTTCCAGGACAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGAAGCATTTCATTCTCCAAGTCGATCGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGCTGATGAAGATGGCGAGAGGAAGGACATAAACATACCCTTGATTCTCCGAAACAAGGCACCAAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAACTTCCGGGGGAGGGTGACGGTTGCATCTGTAAAGAATTTTCAGCTGATCACCGCAACGTCGCCTGCTGCAGAAGTGTCGGTACCGTCACAGCCACCTCCCCAGCCCGCCCAACCTACGCATTCCGACCACGACAAGATCATTCTGCAGTTCGGGAAGGTCGGTAAGGACATATTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACCAAATTGGCGTGTGAATAG | 1335 | 47.64 | MSFRSILRDVRDGFGSLSRRSFELRLSSHSRGKSHGPVHEFDDEPLLIQTSRWASLPPELLLDVVRRLEASENTWPSRRNVVACAAVCRSWRDVCKEIVKSPEFSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPTLLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRYAAGAPLIFRSNFLGTKFIIYDTQIPYNGNQIPTLGRSRRFYSKKVSPKVPTGSYSIAQIAYELNVLGTRGPRRMHCTMYSIPTSSLEPDSSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLADEDGERKDINIPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLITATSPAAEVSVPSQPPPQPAQPTHSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLSSFDTKLACE | 444 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 17906672 | 17911314 | + | Cp4.1LG01g21180.1 | Cpe01g02118 | 463431 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g02118 | 444 | SUPERFAMILY | F-box domain | 48 | 96 | IPR036047 | GO:0005515 | |
Cpe01g02118 | 444 | Pfam | F-box domain | 53 | 99 | IPR001810 | GO:0005515 | |
Cpe01g02118 | 444 | ProSitePatterns | Tub family signature 1. | 359 | 372 | IPR018066 | - | |
Cpe01g02118 | 444 | Pfam | Tub family | 114 | 439 | IPR000007 | - | |
Cpe01g02118 | 444 | ProSitePatterns | Tub family signature 2. | 429 | 444 | IPR018066 | - | |
Cpe01g02118 | 444 | PRINTS | Tubby superfamily signature | 359 | 375 | IPR000007 | - | |
Cpe01g02118 | 444 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
Cpe01g02118 | 444 | PRINTS | Tubby superfamily signature | 401 | 420 | IPR000007 | - | |
Cpe01g02118 | 444 | PRINTS | Tubby superfamily signature | 341 | 358 | IPR000007 | - | |
Cpe01g02118 | 444 | PRINTS | Tubby superfamily signature | 195 | 219 | IPR000007 | - | |
Cpe01g02118 | 444 | PRINTS | Tubby superfamily signature | 422 | 444 | IPR000007 | - | |
Cpe01g02118 | 444 | PRINTS | Tubby superfamily signature | 244 | 271 | IPR000007 | - | |
Cpe01g02118 | 444 | Gene3D | - | 48 | 100 | - | - | |
Cpe01g02118 | 444 | Gene3D | Tubby Protein; Chain A | 113 | 438 | IPR025659 | - | |
Cpe01g02118 | 444 | PANTHER | TUBBY-RELATED | 1 | 444 | - | - | |
Cpe01g02118 | 444 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 1 | 444 | - | - | |
Cpe01g02118 | 444 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 444 | IPR025659 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe01g02118 | Cpe13g00683 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g02118 | Cpe-Chr1:17906672 | Cpe14g00302 | Cpe-Chr14:1776558 | 0 | dispersed | |
Cpe17g00002 | Cpe-Chr17:23583 | Cpe01g02118 | Cpe-Chr1:17906672 | 2.25E-144 | dispersed | |
Cpe02g00859 | Cpe-Chr2:5722716 | Cpe01g02118 | Cpe-Chr1:17906672 | 0 | transposed | |
Cpe01g02118 | Cpe-Chr1:17906672 | Cpe13g00683 | Cpe-Chr13:6388206 | 5.51E-11 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48924 | PF01167 | Tub | 1.40E-109 | CL0395 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g02118 | K19600 | - | csv:101203074 | 789.26 |