Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02118 ATGTCATTCCGCAGCATACTTCGTGATGTAAGGGATGGATTTGGAAGCTTATCTCGACGCAGTTTTGAACTGAGGCTGTCTAGCCATTCCAGGGGTAAATCTCATGGACCAGTTCATGAGTTTGATGATGAACCTCTGTTAATCCAAACTAGCCGCTGGGCTAGCCTTCCGCCCGAGTTATTATTGGATGTGGTTCGGAGACTAGAGGCAAGCGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACGTGTGCAAAGAAATCGTCAAAAGTCCTGAGTTCTCCGGGAAAATTACATTCCCCATCGCCTTGAAGCAGCCCGGACCTCGTGATGGTACTATTCAATGCTTCATCAAGAGGAACAAATCTAATTTAACCTATCATCTTTATCTTTGCCTTAGTCCTACTTTACTTGTTGAGAACGGGAAATTTCTTCTTTCTGCAAAAAGAACGAGGAGAACTACTTCGACCGAGTATGTTATATCATTGGCTGCAGACGATATATCGAGATCGAGCAATGGTTATATCGGAAAGCTAAGGTATGCTGCTGGTGCACCTTTAATTTTCAGATCAAATTTTCTGGGAACAAAGTTCATTATATATGATACACAGATTCCTTACAACGGCAACCAAATTCCGACCCTTGGCCGAAGCCGGAGATTCTACTCCAAAAAGGTCTCTCCGAAGGTACCGACGGGTAGCTACAGCATAGCACAGATTGCATACGAGTTGAACGTCTTAGGTACAAGGGGACCCCGGAGGATGCACTGCACTATGTACTCGATCCCGACTTCATCTCTTGAGCCAGATTCCTCCGTTCCAGGACAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGAAGCATTTCATTCTCCAAGTCGATCGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGCTGATGAAGATGGCGAGAGGAAGGACATAAACATACCCTTGATTCTCCGAAACAAGGCACCAAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAACTTCCGGGGGAGGGTGACGGTTGCATCTGTAAAGAATTTTCAGCTGATCACCGCAACGTCGCCTGCTGCAGAAGTGTCGGTACCGTCACAGCCACCTCCCCAGCCCGCCCAACCTACGCATTCCGACCACGACAAGATCATTCTGCAGTTCGGGAAGGTCGGTAAGGACATATTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACCAAATTGGCGTGTGAATAG 1335 47.64 MSFRSILRDVRDGFGSLSRRSFELRLSSHSRGKSHGPVHEFDDEPLLIQTSRWASLPPELLLDVVRRLEASENTWPSRRNVVACAAVCRSWRDVCKEIVKSPEFSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPTLLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRYAAGAPLIFRSNFLGTKFIIYDTQIPYNGNQIPTLGRSRRFYSKKVSPKVPTGSYSIAQIAYELNVLGTRGPRRMHCTMYSIPTSSLEPDSSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLADEDGERKDINIPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLITATSPAAEVSVPSQPPPQPAQPTHSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLSSFDTKLACE 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17906672 17911314 + Cp4.1LG01g21180.1 Cpe01g02118 463431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02118 444 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515
Cpe01g02118 444 Pfam F-box domain 53 99 IPR001810 GO:0005515
Cpe01g02118 444 ProSitePatterns Tub family signature 1. 359 372 IPR018066 -
Cpe01g02118 444 Pfam Tub family 114 439 IPR000007 -
Cpe01g02118 444 ProSitePatterns Tub family signature 2. 429 444 IPR018066 -
Cpe01g02118 444 PRINTS Tubby superfamily signature 359 375 IPR000007 -
Cpe01g02118 444 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cpe01g02118 444 PRINTS Tubby superfamily signature 401 420 IPR000007 -
Cpe01g02118 444 PRINTS Tubby superfamily signature 341 358 IPR000007 -
Cpe01g02118 444 PRINTS Tubby superfamily signature 195 219 IPR000007 -
Cpe01g02118 444 PRINTS Tubby superfamily signature 422 444 IPR000007 -
Cpe01g02118 444 PRINTS Tubby superfamily signature 244 271 IPR000007 -
Cpe01g02118 444 Gene3D - 48 100 - -
Cpe01g02118 444 Gene3D Tubby Protein; Chain A 113 438 IPR025659 -
Cpe01g02118 444 PANTHER TUBBY-RELATED 1 444 - -
Cpe01g02118 444 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 444 - -
Cpe01g02118 444 SUPERFAMILY Tubby C-terminal domain-like 102 444 IPR025659 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02118 Cpe13g00683 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02118 Cpe-Chr1:17906672 Cpe14g00302 Cpe-Chr14:1776558 0 dispersed
Cpe17g00002 Cpe-Chr17:23583 Cpe01g02118 Cpe-Chr1:17906672 2.25E-144 dispersed
Cpe02g00859 Cpe-Chr2:5722716 Cpe01g02118 Cpe-Chr1:17906672 0 transposed
Cpe01g02118 Cpe-Chr1:17906672 Cpe13g00683 Cpe-Chr13:6388206 5.51E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48924 PF01167 Tub 1.40E-109 CL0395 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02118 K19600 - csv:101203074 789.26