Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02120 ATGGCATCATCCAAGCTCTGGGCATCTTCCAGTTCGCGAAATTCGGATCTATCTCGAGGTTCTTCTTCTTCTTCCTCTTCTGCTTCTCTTTTAAACCCTCAATTTCTCTCCAATAGTTCCAGGAATAATGACAACAATCGGACTCGCAATCGAAGCCATAGTCTTAGCTCGATGAATCTCGATGGCTTAGTTCGTGATGGTTATCACAATACTTCCTCCGGCGCGCCCAAGACTGTGGATGATGTGTGGAGGGAGATTGTGTCGGGTGAGAGGAAGGAGTTGAAGGAGGAGGTTACTGATGAGTTGATAACCCTCGAGGATTTTCTTGTGAAAACTGGAGCTGCGCCTGTTGAGGATGTCAAATTGCCGCAGACGGAGAGGCTGAGTGGAGGGATTTTTTCGTTTGATTCAATTCCAGGCAGCTCGTTTCAGGCAGTGGAAAAGGTCGAAGGATCCATTGTGGGGTTTGGGAGTGGGGTCGATTTGGCTTATCAAGTGGAATTAGAGTCGTTAGTTGCAAAATTAGAGGAGGAGAACGAGCGGCTTTTGAGAGAAAAGGCCGAGATGAGTAAGGAAAGGCATAAGCAGCTAATGGAAAAGGTGATTCCTGTGGTTGAAAAGAGACGACCCCCACGAGGGATTCGGCGAGTGAATTCCATGAAATGGTGA 669 47.53 MASSKLWASSSSRNSDLSRGSSSSSSSASLLNPQFLSNSSRNNDNNRTRNRSHSLSSMNLDGLVRDGYHNTSSGAPKTVDDVWREIVSGERKELKEEVTDELITLEDFLVKTGAAPVEDVKLPQTERLSGGIFSFDSIPGSSFQAVEKVEGSIVGFGSGVDLAYQVELESLVAKLEEENERLLREKAEMSKERHKQLMEKVIPVVEKRRPPRGIRRVNSMKW 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17916960 17921338 + Cp4.1LG01g21190.1 Cpe01g02120 463433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02120 222 MobiDBLite consensus disorder prediction 1 59 - -
Cpe01g02120 222 Coils Coil 165 199 - -
Cpe01g02120 222 MobiDBLite consensus disorder prediction 1 76 - -
Cpe01g02120 222 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 4 155 IPR043452 GO:0003700|GO:0045893
Cpe01g02120 222 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 163 221 IPR043452 GO:0003700|GO:0045893
Cpe01g02120 222 PANTHER BASIC LEUCINE ZIPPER TRANSCRIPTION FACTOR 4 155 - -
Cpe01g02120 222 PANTHER BASIC LEUCINE ZIPPER TRANSCRIPTION FACTOR 163 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02120 K14432 ABF; ABA responsive element binding factor - csv:101223110 224.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02120 Cpe-Chr1:17916960 Cpe04g00422 Cpe-Chr4:4897390 6.60E-35 dispersed
Cpe01g02120 Cpe-Chr1:17916960 Cpe13g00685 Cpe-Chr13:6408108 4.75E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1370 Blo01g01730 . . Bda03g00393 Bpe02g00211 Bpe04g00355 Bma04g00371 Bma01g02509 Cmo04g02568 Cmo15g00598 . . Car01g00864 . . . . . . . . . . . . . . . . . . Cone4ag1498 Cone7ag1450 . . . . . . . . Bda11g00872 . . . . . . . . . . Car04g02360 Car15g00550 Cpe01g02120 . . . . . . . . . . . . . . . . . Chy03g00502 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003827 2 1 1 2 2 1 2 0 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 6 1 44