Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02134 ATGAAGCATAATTCCAAGAATCAACCTCAGCTTTTCTGGCCAAGAGTGGTCCTGCGGAAATGGCTGAATATCAGTGCTAAAGAGTCGGATTACAGTGCCGATACCGAAGACGATGAGGATGCTAATTCGTCCGATTCTGAGACTGAAGGTAGTGAAAATGCAATGTATTCTTGGTTTGGTGGTTTCCGTGTTTGGAATCTGAATTTTATCGAATCTTCGCGAGTTTATTGCAATACAATGAGCTATTTTAGGAATGCAGCGTGTTCTGATTTGATTATTTGGTTGCTTGTAGCAGAATGCAATAGGGGAAGAGAATCACGCTTTAAGGTAGACAACAGAGATGAACCACTGGTTGATGCTAATGATGGGTTGCCGAGGTTGAGAAGAAGAAATTCAGAAACATTTAGGATGCAATATATAAACGCGAAAGATCTCAGAATATGTGTTGCGACTTGGAATGTTGGAGGAAAACTACCTCCTGAAGATCTGGATATTGATGGCTGGATAGATACCAGTGAGCCAGCTGATATCTATGTCCTTGGTCTCCAGGAGATTGTACCATTGAATGCTGGAAATATATTTGGTGCTGAAGATAGTCGCCCAGTTGCTAGGTGGGAAGATATTATCCGTGAAACATTGAATAGAGTTAGACCTGCTACAACCAAGATTAAATGCTTTAGTGATCCACCGTCCCCATCAAAGTTTAAGCCATCTGATGACATCCCAGATTTAGAGGAGGAGATTCTGCAGGAAAGTGATAGTGATGTTGGTGTGGAAGTGCATCCATGTGATGAAGAATTCTATGGGAAGGAAAATGGCGATGGACTGGTAGCTGATAAAAATCTAAGCTGGAAGTTCCCAATTTCGGATCTTTCTGCAAATACCATACCAGAGATACCTGTAGAACAGGATTTAGTGAGGCAATATTCTTCTCCAAAGAGATTGGATCGGTTAAATTGCTTCACAGAGAATGAGGAGGCTGTCTTTCAACAGAACAGAAGATTAACTAAAATGCTTAGTGGGACAGAAAGGATCGGTTTGAGTTGGCCTGAACCTCCACTACATTTACTACCCCATCATGTTTCTGAGAGACCCAACTCTTTTAAATCAATGAATTCATTTAAAAAAACCAAGTCCTTTAGGACATATAGTTCTTTCAAGTCAACCATGAATGAAATGCCGTCAGGGCTTGCTTTGCTTGGAGAAATTGATCTTGAGTCTCTCCTAAAACAGAAGAGAAGATCGTCATATATTAGAATAGTAAGTAAACAAATGGTTGGTGTTTTCCTCACAGTATGGGTTCGTAGGAGTTTGCGAAGGCACATTCAGAATGTAAATGTTTCTACTGTTGGTGTTGGTGTAATGGGCTACATCGGTAACAAGGGATCCATATCTGTCAGCATGTCCATATACCAGACCCTATTTTGCTTTATATGCACTCACCTTACATCAGGTGAGAAGGATGGAGATGAACTTAAAAGAAATGCTGACGTGAGCGAAATACACCGAAGAACTCAATTCCATCCACTTAATGGTATTGGGTTAACTAAAGTTATCCACGATCACGAGCGGATAATCTGGTTGGGTGACTTAAATTATCGTATAAACTTGCCTTATGAGAAGACGAGAGATCTTATCTCGAGAAAAGAGTGGTCCAAATTAGCCGAGAGTGATCAGTTATTGAGGGAAATTAGGAAGGGTCGTGCATTTGATGGATGGACTGAGGGAAACCTTAATTTCCCACCAACCTATAAATACGAGATCAATTCAGAAAAGTATTACGGTGAGGATCCAAAAGTTGGGCTGCGGACTCCAGCATGGTGTGACCGCATACTTTCATATGGAAAGGGATTGAAACTGTGCAGTTATAGGAGGACTGAAATTAAATTTTCTGATCATAGACCAGTGACAGCCACCTACGTGGCCGAGGTCGAGGTCTTCTGTCCCCGTAAGCTACAACGAGCTCTAACATTCACAGACGCAGAGATCGAAAATGGGGAAGCAGCAATGGATGCCGAAAATTTTATCTGA 2031 41.41 MKHNSKNQPQLFWPRVVLRKWLNISAKESDYSADTEDDEDANSSDSETEGSENAMYSWFGGFRVWNLNFIESSRVYCNTMSYFRNAACSDLIIWLLVAECNRGRESRFKVDNRDEPLVDANDGLPRLRRRNSETFRMQYINAKDLRICVATWNVGGKLPPEDLDIDGWIDTSEPADIYVLGLQEIVPLNAGNIFGAEDSRPVARWEDIIRETLNRVRPATTKIKCFSDPPSPSKFKPSDDIPDLEEEILQESDSDVGVEVHPCDEEFYGKENGDGLVADKNLSWKFPISDLSANTIPEIPVEQDLVRQYSSPKRLDRLNCFTENEEAVFQQNRRLTKMLSGTERIGLSWPEPPLHLLPHHVSERPNSFKSMNSFKKTKSFRTYSSFKSTMNEMPSGLALLGEIDLESLLKQKRRSSYIRIVSKQMVGVFLTVWVRRSLRRHIQNVNVSTVGVGVMGYIGNKGSISVSMSIYQTLFCFICTHLTSGEKDGDELKRNADVSEIHRRTQFHPLNGIGLTKVIHDHERIIWLGDLNYRINLPYEKTRDLISRKEWSKLAESDQLLREIRKGRAFDGWTEGNLNFPPTYKYEINSEKYYGEDPKVGLRTPAWCDRILSYGKGLKLCSYRRTEIKFSDHRPVTATYVAEVEVFCPRKLQRALTFTDAEIENGEAAMDAENFI 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17996928 18003614 - Cp4.1LG01g21290.1 Cpe01g02134 463447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02134 676 Gene3D Endonuclease/exonuclease/phosphatase 125 228 IPR036691 -
Cpe01g02134 676 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 11 670 IPR045849 GO:0004445|GO:0046855
Cpe01g02134 676 MobiDBLite consensus disorder prediction 31 51 - -
Cpe01g02134 676 Gene3D Endonuclease/exonuclease/phosphatase 317 674 IPR036691 -
Cpe01g02134 676 SMART i5p_5 334 648 IPR000300 GO:0016791|GO:0046856
Cpe01g02134 676 MobiDBLite consensus disorder prediction 32 46 - -
Cpe01g02134 676 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 3 11 670 - -
Cpe01g02134 676 SUPERFAMILY DNase I-like 135 658 IPR036691 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02134 - - - bhj:120075315 1071.23
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02134 Cpe13g00701 CCT
Cpe01g02134 Cpe13g00679 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02134 Cpe-Chr1:17996928 Cpe14g00893 Cpe-Chr14:7475879 4.69E-125 dispersed
Cpe06g00127 Cpe-Chr6:629953 Cpe01g02134 Cpe-Chr1:17996928 1.61E-21 transposed
Cpe01g02134 Cpe-Chr1:17996928 Cpe13g00701 Cpe-Chr13:6525488 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1278 . . . . . . . . Cmo04g02580 Cmo15g00607 . . . . . . Cpe13g00679 . . . . . . . Cla08g00707 Cam08g1134 Cec08g0723 Cco08g0831 Clacu08g0842 . Cre08g0643 Cone4ag1505 Cone7ag1445 Cone17ag0789 Cone20ag0384 . . . Cme03g00326 . . . . Bpe02g01112 Bpe14g00446 . . . . . . . Car04g02373 . Cpe01g02134 . . . . . . . . . . . . . . . Lsi08g00551 . . .
Vvi18g1334 . . . . . . . . Cmo04g02580 Cmo15g00580 . . . . . . Cpe13g00701 Bhi04g01737 . . . . . . Cla08g00742 Cam08g1169 Cec08g0759 Cco08g0867 Clacu08g0876 . Cre08g0677 . . Cone17ag0768 Cone20ag0358 . . . . . . . Bda13g01416 . . Bma01g01429 . . . . . . Car04g02373 Car15g00534 Cpe01g02134 . . . . . . . . . . . . . . . Lsi08g00578 . Chy03g00484 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003115 1 10 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 52