Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02140 ATGGCACTCCATTCTCACATTGAGAGAGTGCTCTGGAACCAGGACCAGATTTCTTCTCGAGTCGCCGACCTCGCCTCCCAAATCTCTGCCGACTTCTCTGAAACCTCTTCGCCGCCGGTCATCGTCGGCGTCGCCACTGGAGCCTTCATCTTCCTGGCTGACTTGGTCCGTCGCATCAATCTTCCAATCACTCTCGACTTTGTTCGGGTCGAATCTTACGGTGTTGGTACTGAGTCTAATGGTGCTCCTAGAATTTCGTCGGACTTGAAAGTGGATGTCAAGAACAAGCACGTAATTCTGGTTGAGGATATTGTAGATTCTGGAAATACTTTATCTTGTCTCCTTGCTCATATGGAGGCAAAAGGAGCTTCATCTGTATCAGTATGCACTTTTCTCGATAAACCAACTAGACGAAAGTGTCCAGATTACTTTGTCGTGGGCTACGGTATGGACTTTGCAGAACTGTACAGAAATTTGCCATATATTGGCGTTTTGAAGCCTGAATGTTACCAGTGA 516 47.09 MALHSHIERVLWNQDQISSRVADLASQISADFSETSSPPVIVGVATGAFIFLADLVRRINLPITLDFVRVESYGVGTESNGAPRISSDLKVDVKNKHVILVEDIVDSGNTLSCLLAHMEAKGASSVSVCTFLDKPTRRKCPDYFVVGYGMDFAELYRNLPYIGVLKPECYQ 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18029918 18033323 - Cp4.1LG01g21580.1 Cpe01g02140 463453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02140 171 CDD PRTases_typeI 24 139 IPR000836 -
Cpe01g02140 171 TIGRFAM HGPRTase: hypoxanthine phosphoribosyltransferase 10 166 IPR005904 GO:0004422|GO:0006166
Cpe01g02140 171 PANTHER HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE 4 171 - -
Cpe01g02140 171 SUPERFAMILY PRTase-like 3 170 IPR029057 -
Cpe01g02140 171 Gene3D - 1 171 IPR029057 -
Cpe01g02140 171 PANTHER HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE 4 171 - -
Cpe01g02140 171 Pfam Phosphoribosyl transferase domain 15 148 IPR000836 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02140 K00760 hprT, hpt, HPRT1; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] - csv:101219321 296.204
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe16g00281 CST 82 562 PRT Gene Family AT2G16570 84.5 2.5e-240 828.6
Cpe05g01298 CST 70 556 PRT Gene Family AT2G16570 83.2 2.7e-239 825.1
Cpe05g01298 CST 72 556 PRT Gene Family AT4G34740 85.0 1.1e-243 839.7
Cpe16g00281 CST 82 562 PRT Gene Family AT4G34740 85.3 1.7e-241 832.4
Cpe16g00281 CST 25 535 PRT Gene Family AT4G38880 69.5 3.0e-200 695.3
Cpe05g01298 CST 69 529 PRT Gene Family AT4G38880 73.0 1.9e-194 676.0
Cpe01g02140 . 1 170 PRT Gene Family AT1G71750 59.9 2.3e-60 229.2
Cpe06g00842 . 40 468 PRT Gene Family AT1G55810 87.2 1.1e-219 759.6
Cpe02g01427 . 19 469 PRT Gene Family AT1G55810 73.2 2.2e-191 665.6
Cpe04g00495 . 19 459 PRT Gene Family AT1G55810 72.5 6.8e-185 644.0
Cpe06g00842 . 65 467 PRT Gene Family AT3G27440 77.2 1.1e-184 643.3
Cpe02g01427 . 80 469 PRT Gene Family AT3G27440 74.6 1.4e-171 599.7
Cpe04g00495 . 80 459 PRT Gene Family AT3G27440 74.0 4.6e-167 584.7
Cpe02g01427 . 1 469 PRT Gene Family AT3G27190 85.5 4.1e-236 814.3
Cpe04g00495 . 1 459 PRT Gene Family AT3G27190 84.6 6.8e-231 797.0
Cpe06g00842 . 51 467 PRT Gene Family AT3G27190 79.9 2.8e-200 695.3
Cpe10g00910 . 4 266 PRT Gene Family AT3G53900 61.0 1.2e-92 337.0
Cpe06g00842 . 30 468 PRT Gene Family AT4G26510 81.7 4.3e-222 767.7
Cpe02g01427 . 11 469 PRT Gene Family AT4G26510 74.3 8.4e-202 700.3
Cpe04g00495 . 7 459 PRT Gene Family AT4G26510 74.2 1.1e-196 683.3
Cpe02g01427 . 1 469 PRT Gene Family AT5G40870 86.0 7.0e-236 813.5
Cpe04g00495 . 1 459 PRT Gene Family AT5G40870 84.6 3.1e-231 798.1
Cpe06g00842 . 51 470 PRT Gene Family AT5G40870 78.8 1.4e-199 693.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011220 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 30