Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02142 ATGGCAACTCCAGTTACGGCACCGGCGACTGTCGCTACAGTTCAAACGGCGGCGATTCCTCCGACTGACTCTGTCGCCACTCGAGGCAGATTCTTGAGTTCTTCATTGTATGTTGGCGATCTGGACCCGACTGTGAACGAGGGACAGCTTTTGGAACTGTTTAGCCAAGTGGCTCAGGTTGTCTCTATTAGGGTTTGCAGGGATCAGACAGGCAGGCAATCGCTTGGATACGCTTATGTTAATTTCAGCAATCATCAGGAAGCTTCCAGCGCCTTGGAACATTTGAATTTCTCCCCCATTAATGGGAAGCCTATCAGGATTATGATGTCGAATCGAGATCCTAGCATCCGAAAAAGTGGCCATGCAAATGTTTTCATCAAAAATCTGGACGCATCAATTGATAACAAGGCATTGCAAGATACATTTGCTACCTTCGGTCCTATTCTTTCGTGTAAAGTTGCCATTGATAGCAATGGTCAATCAAAAGGGTATGGATTTGTGCAATTTGAAAATGAGGAAGCTGCAAACATTGCTATAGTTAGGTTGAATGGCATGCTGCTCAATGATAAGCAAGTTTTTGTTGGAAATTTTATTCGACGTCAGGAAAGGATTCAGGCAAATGGATCGACATTTACTAATGTTTATGTGAAGAATTTACTGGAAACTACTACAGCTGATGACCTAAAAAATCTTTTTGCTACACATGGTGACATTACTAGTGCAGCTGTCATGACAGATTCGAAGGGGAAGTCCAAATGTTTTGGCTTTGTGAATTTCCAGAGCCCAGACTCTGCTGCTGCTGCAGTTGAAATGTTGAATGGTACCATCCTTGGTGATGAAAAGGTTCTGTATGTAGCCAGGGCTCAGAAGAAAGCAGAAAGGGAGGCCGAGTTGAAAGCAAAATTTGAACAGGACCGAAAGAGTAGATTTGAAAAATTACAAGGTGCTAATTTGTATATAAAAAACCTTGATGACCATATTGATGATGAGAAGCTCAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGTTGAATGAATTGAATGGAAAAATGAAGGGAAGGAAACCTCTGTATGTGGCTGTTGCCCAGCACAAAGAAGAGAGAAAGGCTCGGCTCCAGGCTCAATTTGCTCAAGCCAGAGCAGCTGGCGCAATGTCGTCTTTGCCTTCAGGACTTCCAGGGTTTCATCCAGGTGCACCACGACTTGCACCTCAGCAGCTGTATTATGGTCAGGGAAATCCCGGGCTGGTGCCCTCACAGCCTGCTGGATACGGCTTCCAGCCTCAACTCATGACCGGAATGCGACCTGGTATGGGTCCAAACTTCATCATGCCTTACCAGTTTCAGAGGCAAGGACAGCCCGGGCCACGTCCTGGGATGAGGCGAGGTGGAAATTTGCAACCATTTAAGCAGCAGCAGCAGCAGCAGGAGTCACTGCTCCGTGGCACTGGACAAGGTTTTAGTTACATGAACAATGTACGGAATGGATTAAAGCCACCCGTCCTGCCCCCTGTTCTGCCTCAAGCTCTTGTTGGTCCAGTGATGCCTCTGACTTTTGATACTTCTGGAGTGTCTAGCTCCCCCATTGACGTCCAACGATCAAGGGTCGTGCCTTCATCAACAACACTCGCTTCTGCATTAGCTTCTGCTTCACCCGAAAACCAACGTGTGATGCTCGGCGAGCAGCTGTATCCACTTGTGGAATGTCTCGAGCCAGGTCATGCAGCAAAGGTTACTGGAATGTTGCTGGAAATGGACCAACCAGAGGTCCTTCATCTCATCGAGTCACCGGATGACTTGAAGAGTAAGGTGGCTGAGGCAATGGAAGTCCTCCACAAAGCTTCATCGGAACCCGAGCTATCTGATCAGCTCGGTGCATTGGCCCTGGCCAAATGA 1905 46.98 MATPVTAPATVATVQTAAIPPTDSVATRGRFLSSSLYVGDLDPTVNEGQLLELFSQVAQVVSIRVCRDQTGRQSLGYAYVNFSNHQEASSALEHLNFSPINGKPIRIMMSNRDPSIRKSGHANVFIKNLDASIDNKALQDTFATFGPILSCKVAIDSNGQSKGYGFVQFENEEAANIAIVRLNGMLLNDKQVFVGNFIRRQERIQANGSTFTNVYVKNLLETTTADDLKNLFATHGDITSAAVMTDSKGKSKCFGFVNFQSPDSAAAAVEMLNGTILGDEKVLYVARAQKKAEREAELKAKFEQDRKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKLNELNGKMKGRKPLYVAVAQHKEERKARLQAQFAQARAAGAMSSLPSGLPGFHPGAPRLAPQQLYYGQGNPGLVPSQPAGYGFQPQLMTGMRPGMGPNFIMPYQFQRQGQPGPRPGMRRGGNLQPFKQQQQQQESLLRGTGQGFSYMNNVRNGLKPPVLPPVLPQALVGPVMPLTFDTSGVSSSPIDVQRSRVVPSSTTLASALASASPENQRVMLGEQLYPLVECLEPGHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLHKASSEPELSDQLGALALAK 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18036128 18039931 - Cp4.1LG01g21570.1 Cpe01g02142 463455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02142 634 CDD RRM2_I_PABPs 120 196 IPR045305 -
Cpe01g02142 634 MobiDBLite consensus disorder prediction 453 482 - -
Cpe01g02142 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Cpe01g02142 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 382 IPR000504 GO:0003723
Cpe01g02142 634 Pfam Poly-adenylate binding protein, unique domain 550 614 IPR002004 GO:0003723
Cpe01g02142 634 SMART rrm1_1 35 108 IPR000504 GO:0003723
Cpe01g02142 634 SMART rrm1_1 213 286 IPR000504 GO:0003723
Cpe01g02142 634 SMART rrm1_1 123 195 IPR000504 GO:0003723
Cpe01g02142 634 SMART rrm1_1 317 363 IPR000504 GO:0003723
Cpe01g02142 634 PANTHER RNA BINDING PROTEIN 33 346 - -
Cpe01g02142 634 Gene3D - 305 373 IPR012677 -
Cpe01g02142 634 SUPERFAMILY PABC (PABP) domain 441 620 IPR036053 GO:0003723
Cpe01g02142 634 PANTHER RNA BINDING PROTEIN 347 622 - -
Cpe01g02142 634 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 542 619 IPR002004 GO:0003723
Cpe01g02142 634 Gene3D - 540 619 - -
Cpe01g02142 634 Gene3D - 27 113 IPR012677 -
Cpe01g02142 634 SMART poly_2 554 617 IPR002004 GO:0003723
Cpe01g02142 634 CDD RRM1_I_PABPs 35 114 - -
Cpe01g02142 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 194 IPR000504 GO:0003723
Cpe01g02142 634 Gene3D - 114 202 IPR012677 -
Cpe01g02142 634 SUPERFAMILY RNA-binding domain, RBD 212 371 IPR035979 GO:0003676
Cpe01g02142 634 SUPERFAMILY RNA-binding domain, RBD 34 200 IPR035979 GO:0003676
Cpe01g02142 634 PANTHER POLYADENYLATE-BINDING PROTEIN 33 346 - -
Cpe01g02142 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 354 IPR000504 GO:0003723
Cpe01g02142 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Cpe01g02142 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 282 IPR000504 GO:0003723
Cpe01g02142 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 191 IPR000504 GO:0003723
Cpe01g02142 634 Coils Coil 365 385 - -
Cpe01g02142 634 Coils Coil 285 305 - -
Cpe01g02142 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Cpe01g02142 634 PANTHER POLYADENYLATE-BINDING PROTEIN 347 622 - -
Cpe01g02142 634 Gene3D - 203 302 IPR012677 -
Cpe01g02142 634 CDD RRM3_I_PABPs 211 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02142 Cpe-Chr1:18036128 Cpe15g00480 Cpe-Chr15:5807407 0 dispersed
Cpe15g00552 Cpe-Chr15:6369847 Cpe01g02142 Cpe-Chr1:18036128 1.01E-08 transposed
Cpe01g02142 Cpe-Chr1:18036128 Cpe13g00706 Cpe-Chr13:6557787 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02142 K13126 - csv:101219081 935.636