Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02212 ATGTTTGCTGCCATTGCCATTCTGTTGTTCACCTGGTTTTTGAGCTCCTCTCTGCCTTCTCTGGCAGCTTTCAGTTTCAATCTCACTGACCCACATCTTCTTCCAGATCCTGAAACTGTTGTTTATGAAGTTCAGAGGAGTGTGAATGATTCATTTTCAAGAAGGGAAATGCTGTCGATTCACTCTAAAGGTCAATCGAATTCCTGTCAAACTGGAAACCCTATCGATGATTGTTGGCGCTGCGGTTCGAACTGGCAAGCCAATCGCCAACGGCTTGCAGATTGCAGCATTGGATTTGGCCGAAACGCCATGGGAGGTAAAGGAGGTCAGATCTACATAGTTACAGATTCCTCCGATTCCGACCCTGTAAACCCTCGCCCTGGAACTCTCCGCTACGCTGTGGTTCAAGATGAACCTCTCTGGATCGTCTTTGCTGCAGACATGACTATCAAACTCAAGTACGAACTCATGATGAACAGTTACAAAACCCTAGATGGCCGCGGCGCGAATGTCCACATAACCGGCGGCGGTTGCATCACACTTCAGTACATCTCGAATGTAATCATTCACAACATCAACATTCACCACTGTATCCCTACCGGTCACACTAACGTCCGATCAAGCCCTACGCACGTCGGATACAGAGGAAAGTCCGACGGCGATGGAATCTCAATCTTCAGCTCGCGCAACATCTGGATCGATCATTGCTCCTTATCGTACTGTACCGACGGCTTAATCGACGCCATAATGGGATCGACCGGAATCACGATCTCGAACAACTACTTCTCGCACCACGACGAGGTGATGCTGCTAGGGCACGAGGACGGCTATACGCCAGACTCGGGGATGCAGGTGACGATTGCGTTTAATTTGTTCGGCGAGAAGCTGGTTCAGCGGATGCCGCGGTGCCGGCGGGGTTATATACACGTGGTCAACAACGAGTTCCGGTCGTGGGAGATGTACGCCATCGGCGGTAGCGGTGGTCCGACGATCAACAGCCAAGGGAATCGGTATATTGCACCGGGGAATCCCAATGCGAAGGAGGTGACGAAGCGCGTGGACACAAACGCGGGGGATTGGTCGGAATGGAACTGGAGAACGGAGGGGGACATAATGGTAAATGGTGCATTTTTTGTGCCGTCCGGCGAAGGACTGAGCAATATGTACGTTAAAGCTTCGAGTGTGGCGCCCAAATCCGCCGCTCTTGTCGACCAGCTCACTCTCAACGCCGGCGTCTTTGGCGGGACCAGGGAGAGTAGACAGAGCAGCTCGTACCCTGGAGACGAGAGCTTTTCCAATTCCGGGTCCAGTGGCAGCGACAGCGGTGGTGACTACTTCGGGATGATATTCGGCGGGGGCGGTGTGAACAGTGCACTGCCACCATCTCTTTCAGTTGTTAACATGGTCGTTCTAACTCTGCTTACTATTTTAGTTCTGTACACAAACTCAATCTATGATGCTTTATTATCATTGACAGCATTGTAG 1485 51.31 MFAAIAILLFTWFLSSSLPSLAAFSFNLTDPHLLPDPETVVYEVQRSVNDSFSRREMLSIHSKGQSNSCQTGNPIDDCWRCGSNWQANRQRLADCSIGFGRNAMGGKGGQIYIVTDSSDSDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCITLQYISNVIIHNINIHHCIPTGHTNVRSSPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHEDGYTPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNEFRSWEMYAIGGSGGPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSVAPKSAALVDQLTLNAGVFGGTRESRQSSSYPGDESFSNSGSSGSDSGGDYFGMIFGGGGVNSALPPSLSVVNMVVLTLLTILVLYTNSIYDALLSLTAL 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18815530 18819744 + Cp4.1LG01g24660.1 Cpe01g02212 463525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02212 494 SMART amb_all 147 344 IPR002022 -
Cpe01g02212 494 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Cpe01g02212 494 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Cpe01g02212 494 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
Cpe01g02212 494 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
Cpe01g02212 494 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Cpe01g02212 494 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Cpe01g02212 494 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Cpe01g02212 494 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
Cpe01g02212 494 Gene3D - 72 414 IPR012334 -
Cpe01g02212 494 PANTHER PECTATE LYASE 18-RELATED 5 432 IPR045032 GO:0030570
Cpe01g02212 494 MobiDBLite consensus disorder prediction 416 438 - -
Cpe01g02212 494 SUPERFAMILY Pectin lyase-like 73 412 IPR011050 -
Cpe01g02212 494 PANTHER PECTATE LYASE 5 432 - -
Cpe01g02212 494 Pfam Pectate lyase 155 324 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02212 Cpe-Chr1:18815530 Cpe20g00339 Cpe-Chr20:1918062 0 dispersed
Cpe01g01256 Cpe-Chr1:7517844 Cpe01g02212 Cpe-Chr1:18815530 0 wgd
Cpe01g02212 Cpe-Chr1:18815530 Cpe10g00244 Cpe-Chr10:1418792 0 wgd
Cpe01g02212 Cpe-Chr1:18815530 Cpe13g00765 Cpe-Chr13:6983856 0 wgd
Cpe01g02212 Cpe-Chr1:18815530 Cpe19g00431 Cpe-Chr19:3875886 4.06E-129 wgd
Cpe01g02212 Cpe-Chr1:18815530 Cpe09g00403 Cpe-Chr9:2530200 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02212 K01728 - csv:101207535 853.203