Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02236 ATGAATAGAGGAATGGATTCAGTGAAAGAACCAATGAGGAACGTTGAGAAGTGTTTAGATTCTCAGCTATGGCATGCTTGTGCTGGTGGGATGGTTCAAATGCCTTCTGTTAACTCTAAGGTGGTCTACTTTCCCCAGGGCCACGCGGAGCATGCTCAGGGGAATGTCGATTTTGGGAACGCTCGGATTCCTTCACTCATTCCTTGTAGGGTGTCTGCTACTAAATATATGGCAGATCTTGAAACGGATGAGATTTTTGCTAAGATAAGTTTGCTTCCATTGAGGAACAATGAATTCAATTTGGATGACGACTACGAGCTTCTTGGACACGATGATATTAGGAACCAGGAGAAACCATCCTCCTTTGCCAAGACATTGACGCAATCTGATGCGAACAATGGTGGAGGATTCTCTGTTCCTCGCTATTGTGCCGAGACTATCTTCCCTCCGTTGGATTACTCGGCAGAACCTCCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGCGAGATTTGGAAGTTTAGACATATATACAGAGGGACTCCCCGTCGCCATCTTTTGACGACGGGGTGGAGTAATTTTGTGAATCAGAAGAAGCTTGTTGCAGGGGACTCGATTGTTTTCCTCCGGGCAGAAACTGGTGATCTTTGTGTCGGAGTTAGGCGAGCCAAGAGGGGAATTGGTTGCGGAATTGATTACTCACCTGGGTGGAACCCTGCAAATTCAGGCTCTTCACTTATGGGGTATTCTGATTTCATGAGGGAAAATGAAGGTAGAATGGTAAGACGACACTCAAACGGGAATCTTAACGGGAGAGTGAAGGTCGAATCCGTCATCGAAGCTGCAACGCTTGCTGCCAGTGGCAAGCGCTTCGAGATTGTGTACTACCCATGTGCTGGCACTCCAGAATTTGTTGTTAGGGCCTCTACTGTAAGATCTGCTATGCAAATTCATTGGTATTCTGCTATGAGATTTAAGATGCCTTTCGAAACCGAGGATTCGTCTCGGATAAGCTGGTTTATGGGAACGATATCTTCGATCCAGGTTGCCGATCCTGTTCGGTGGCCTGATTCTCCATGGCGAATGCTGCAGGTGTCATGGGATGAACCAGATTTACTACAAAATGTGAAGAGTGTTAACCCCTGGTTGGTTGAAGTGGTAGTAAACATGCCAGCAATCCATGTCTCCCCCTTCTTGCCACCAAGAAAGAAGCCACGTTATCCGCTTCAGGCCGAAACTGCTGTATTTGGTCACCTTCCGATGCCCTCGTTTTCGACTAATTTCTTCGAAGCAACCAACCCGTTTCAAAGCATTACGGCGAGCAACATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCATCCAACCTCCAAATCAGCATACCGCCTTTGAGACAGTTTCCTGCCGGTCTTAAGCATCTTGAAGGTGCCACTCCGATCCCTGTCGTCCGTGGCGAGGATAGCTTCGGAGGCACGAAAAGCCCTGATAATCAATCTCATTGGCTAACAGTGGGAAATCATATCCAAAGCTCAAAAGAAACCAAAGAGACAAAACCAGATCATATCATATTGTTTGGCCAACTCATTCTTCCTAATCAACAGAGTTCTAACAGCTCCTCTGGAGATACGACGAACGCATCCGATGCAAATCTAGAGAAAGCATCGAATCTTTCTGATGGTTCTGGCTTGTCCTCACAGCAGAACGGTTCACTGGACAATTCATCAGATGGAGGGTCTACGTCATACAACGGTCCGAACAAAACTGGTCTAAGCTTGGACATTGGTCATTGCGAGGTGTTTATGGAGTTGGAGAATGTCAGTCACACACTCGACCTGTCGGTCCTCGGATCATACGAAGAATTGTATAGAAAGCTCGGCAACATGTTTAGCGTAGGACGGTCAGAGATGCTGAATTCTGTTCTTTATCAGGATGCTCTTGGTGCTACAAAGCAAGCTGGAGATGAGCCTTTCAGCAAGTTTATGAGGACAGCACGAAGACTAACCATACTCGCAAATTCTCGAAGCAGATTCTCGAAGAAACGACAATATTAA 2067 46.59 MNRGMDSVKEPMRNVEKCLDSQLWHACAGGMVQMPSVNSKVVYFPQGHAEHAQGNVDFGNARIPSLIPCRVSATKYMADLETDEIFAKISLLPLRNNEFNLDDDYELLGHDDIRNQEKPSSFAKTLTQSDANNGGGFSVPRYCAETIFPPLDYSAEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAETGDLCVGVRRAKRGIGCGIDYSPGWNPANSGSSLMGYSDFMRENEGRMVRRHSNGNLNGRVKVESVIEAATLAASGKRFEIVYYPCAGTPEFVVRASTVRSAMQIHWYSAMRFKMPFETEDSSRISWFMGTISSIQVADPVRWPDSPWRMLQVSWDEPDLLQNVKSVNPWLVEVVVNMPAIHVSPFLPPRKKPRYPLQAETAVFGHLPMPSFSTNFFEATNPFQSITASNIPAGIQGARHTQFGLSSSNLQISIPPLRQFPAGLKHLEGATPIPVVRGEDSFGGTKSPDNQSHWLTVGNHIQSSKETKETKPDHIILFGQLILPNQQSSNSSSGDTTNASDANLEKASNLSDGSGLSSQQNGSLDNSSDGGSTSYNGPNKTGLSLDIGHCEVFMELENVSHTLDLSVLGSYEELYRKLGNMFSVGRSEMLNSVLYQDALGATKQAGDEPFSKFMRTARRLTILANSRSRFSKKRQY 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19019574 19022889 + Cp4.1LG01g24390.1 Cpe01g02236 463549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02236 688 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe01g02236 688 Gene3D - 599 682 - -
Cpe01g02236 688 CDD B3_DNA 121 222 IPR003340 GO:0003677
Cpe01g02236 688 Gene3D - 120 224 IPR015300 -
Cpe01g02236 688 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 11 676 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe01g02236 688 MobiDBLite consensus disorder prediction 558 589 - -
Cpe01g02236 688 Gene3D - 320 391 - -
Cpe01g02236 688 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Cpe01g02236 688 PANTHER AUXIN RESPONSE FACTOR 16 11 676 - -
Cpe01g02236 688 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Cpe01g02236 688 SUPERFAMILY DNA-binding pseudobarrel domain 112 224 IPR015300 -
Cpe01g02236 688 SMART B3_2 122 224 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02236 Cpe13g00800 CCT
Cpe01g02236 Cpe13g00800 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02236 Cpe-Chr1:19019574 Cpe05g00816 Cpe-Chr5:5047352 0 dispersed
Cpe11g00421 Cpe-Chr11:2374184 Cpe01g02236 Cpe-Chr1:19019574 1.27E-16 dispersed
Cpe01g02236 Cpe-Chr1:19019574 Cpe10g00219 Cpe-Chr10:1241922 0 wgd
Cpe01g02236 Cpe-Chr1:19019574 Cpe13g00800 Cpe-Chr13:7188933 0 wgd
Cpe01g02236 Cpe-Chr1:19019574 Cpe16g00530 Cpe-Chr16:6226242 0 wgd
Cpe01g02236 Cpe-Chr1:19019574 Cpe19g00413 Cpe-Chr19:3647403 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48933 PF02362 B3 4.70E-21 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02236 - - cmo:103496426 1127.08