Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02241 ATGGCGAAGAATGCAGCGGAACGCGGCTCGTTCTCGGCGAAGGACTACCACGATCCACCACCGGCGCCGCTCATCGATGCCGTGGAGATTACGAAATGGTCGTTTTACAGAGCTCTGATTGCGGAGTTCATAGCCACTCTGCTTTTCCTGTACGTCACTGTGTTGACGGTGATCGGCTACAAATCGCAGACGGATCATACCGGCAACAAGAACAATGATGCTTGCGGTGGCGTTGGGATTCTTGGCATTGCCTGGGCGTTTGGTGGAATGATCTTCGTTCTTGTTTACTGTACCGCTGGAATTTCAGGTGGGCATATAAATCCAGCAGTGACATTTGGGCTTTTGTTGGCCCGAAAGGTGTCACTTGTCCGGGCCGTGATGTACATGGTGGCCCAATGTTTAGGGGCCATTTGTGGAGTTGGGCTCGTGAAGTCCTTCCAAAAGGCCCACTTCCAGAAGTACGGCGGTGGGGCAAATGGGCTCGCCGACGGCTACACCGTCGGCGTTGGACTGGCGGCGGAGATCGTAGGGACGTTTGTGTTGGTGTATACAGTCTTCTCTGCTACAGATCCCAAACGAAGCGCAAGAGATTCCCACGTTCCTGTTTTGGCGCCACTCCCAATTGGATTTGCAGTGTTCATAGTTCACCTGGCCACCATTCCAGTCACTGGCACTGGAATCAACCCAGCTAGGAGCTTGGGATCTGCTGTTATTTTCAACCACCAAAACACTTGGAATAATCACTGGATATTTTGGGTTGGACCCTTCATAGGAGCAGCCATTGCAGCTTTCTACCACCAATTCATCCTGCGAGCAGGTGCTGTGAAGGCTCTTGGGTCATTTAGAAGCAACCCAAATGTGTGA 864 52.2 MAKNAAERGSFSAKDYHDPPPAPLIDAVEITKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDHTGNKNNDACGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVMYMVAQCLGAICGVGLVKSFQKAHFQKYGGGANGLADGYTVGVGLAAEIVGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPVTGTGINPARSLGSAVIFNHQNTWNNHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPNV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19049402 19052706 + Cp4.1LG01g24430.1 Cpe01g02241 463554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02241 287 CDD MIP 37 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g02241 287 PANTHER AQUAPORIN PIP2-1-RELATED 5 284 - -
Cpe01g02241 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 284 IPR034294 -
Cpe01g02241 287 SUPERFAMILY Aquaporin-like 29 271 IPR023271 -
Cpe01g02241 287 Gene3D Glycerol uptake facilitator protein. 22 287 IPR023271 -
Cpe01g02241 287 TIGRFAM MIP: MIP family channel proteins 41 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g02241 287 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g02241 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g02241 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g02241 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g02241 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g02241 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g02241 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cpe01g02241 287 Pfam Major intrinsic protein 29 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02241 Cpe09g00420 CCT
Cpe01g02241 Cpe09g00420 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02241 Cpe-Chr1:19049402 Cpe05g00821 Cpe-Chr5:5093243 1.80E-168 dispersed
Cpe01g01236 Cpe-Chr1:7408243 Cpe01g02241 Cpe-Chr1:19049402 2.41E-148 wgd
Cpe01g02241 Cpe-Chr1:19049402 Cpe10g00212 Cpe-Chr10:1212635 8.64E-147 wgd
Cpe01g02241 Cpe-Chr1:19049402 Cpe13g00804 Cpe-Chr13:7202436 1.04E-32 wgd
Cpe01g02241 Cpe-Chr1:19049402 Cpe16g00536 Cpe-Chr16:6270595 7.80E-166 wgd
Cpe01g02241 Cpe-Chr1:19049402 Cpe19g00409 Cpe-Chr19:3617325 2.42E-173 wgd
Cpe01g02241 Cpe-Chr1:19049402 Cpe08g01099 Cpe-Chr8:8324588 8.51E-152 wgd
Cpe01g02241 Cpe-Chr1:19049402 Cpe09g00420 Cpe-Chr9:2660647 5.56E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02241 K09872 - twl:119980357 502.286