Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02280 ATGCGATATCACTGCACAAAAAGGAAAATGTCATTTGCTCATCGCTCTCTGGTTAATGGTCACATGAAATCCAAGTTGGATCCCTTGGGATTGGAAGAAAGGAAAATTCCTGATGAGTTGGACCTTGCACATAATGGATTCTCGGAAGCTGATCTTGATCGGGATTTTTTTTGGGGGATGTGGAAAATGTCCGGATTTCTGTCTGAGAGCCGTCCCACTCAGACCCTCAGATCCGTTTTGATCCGTCTTGAGCATTTCTTAATTAGAGGAGAATCAAAGTGGCTGCGACAAACAGGACTTGTGGTGATGGCAAGATTGGAGCGTTTTCTTCAGAAGAGTGATGACAACCCTTTGCTTACACCTGAGATGGATCCTACTCTTAGGAAGCAAATCCAAGAATGCAATTGGCAAGTTGTGAATGCTTCAACTTCAGTTAATTACTTCGATGTTCTGAGGCGTCAATTTGATGATGTAAGAAACCACTCAGGTTTTGACAAGTATGGGACTAGATTAAGCGCCTTATCAAGGACCAAAATCTGCACTCTGATCGTCAAGAAGGTCCATTTAGAGAGTCTGAGATGGATTGCAATTATAAAGGCCTTCTACGCTTTCATCAGAATTGGAATTTCCACAGAATGCCTGAGGAATCACACAGAGAGGGAGAGAGGGAGAGAGAGGGAGAGAGAGGGAGAGATGGGGCAAGAAGGTCAAATGTTTGAGAAGGTAAAGCCATATTTGGGAGCAATTGCACTAAGATTCGCTTCTGCAGGAATGTCTATTATCTCCAAGGCTGCTCTAAACCAAGGAATGAACCAACTTGTTACCATTGTTTATCGTTACTCTATTGGTGCCATTGTTGTTGCTCCTTTTGCCTTTGTCTTGGACAGGAAAATAAGACCAAAGATGACTCTTAGGATCTTCGGCAAGATCCTTCTACTGGGATTGCTCGAGCCTGTAATAGCTCAGAGCTTGATTTACTCTGGTACTAAATACACCACTGCAACTTTTGCAACTGCCATGTGTAATATTCTTCCTGCCTTTGCGTTTCTAATGGCTTGGATTTGCAGAATGGAGAAGGTGAATATTAGAAGATTACGAAGCCAGGCGAAGATTTTAGGCACTTTAGTGACAGTAGGAGGAGCAATGATGATGACTCTTTTAAAAGGACCCATGTTGAATTTGCCTTGGACAAAAGAGAACCACATCCCTCACTCTTACTCCACCCTTGCAAACAAGCAAGAACCTGTTAAGGCTGCCATTGTTATTACCATTTCAAGTATCTGTTCCTCAGCCTTCACCATTCTTCTGGCGCATACAATAAGATCATACCCAGCTGAGCTTACACTAACAACTTTCATATGCTTGGCTGGAGCTGTGGAAAGTACTATTTTAGCTTTAGCATTTGAATGGAACAATCCAGCCGCATGGGCCTTACATGCAGATTCCATACTCTTAGCTGCCCTCTATGGGAATAATATCCTCTGGAATTGCTTATTATATCCAAGGAGTGGTGGTGAAGCTAAAAGGACCTGTGTTTGTAACTGCATTCAATCCTCTCAGCATGGTCGTAGTTGCTGTGATAAGTTCATTCATATTTGCCGAGAGACTGCGCTTAGGAAGGAACTAAGTGGCGCTTTGAAGCAGGCAAAGCCATATTTAGCTGCCATCCTTCTAAGATTTGTAGCCGCTGGTTTGATTGTGATAGCCAAGATTGCGTTGAATGAAGGCATGAGCCCACAGGTGTATTCGCTCTATCGTTATTGTGTTGCTGCCATTGTTGTAGCTCCATTTGCCCTTCTCTTTGATAGCTCTGTGGTTATCCCTAACACATATTTCACTGGTTTGAAGTTTGTATCTCCAACTTTCTCCATTGCTATGTCCAATGCTGTTCCTGCGCTTTCGTTCTTCTTCGCTTGGATTTTTAGGATGGAAAAGGTTGATATTAGGAGAGTTTCATCTTGGGCAAAGATATTAGGAACTGCAGTGACAGTGGGAGGAGCAATGACAATGATCTTTGTCCGACACCCAACCTTAAGCTTTGGTTGGACAAAAGGAGCTGACTCCCAACATCACTCATCAACTGATGCAAACAACCAAGATTATCGTTTCAAAGGTGTCATTTTGGTCACAATTTCTTGTGTTTCCTCTTCACTTTCATGCGTTCTTCAGGCAATTGTGTTGAAATCATATCCTGTGGGGCTGAGTCTCACTGTTTTGGTGAGCTTAGTGGGAGTTGTGGAAGGCAGTGTGATAGCTTTGGCAATGGAATGGAACAATCCAGCTGCTTGGTCAATTCATTTTGATTTTCAACTCTTGGCCATCCTTTATGCTGGAATATTAATCTCAGGGCTTTCGTACTACGTTCAAGGAGTTGTAATGGAGGCAAAGGGAGCTGTGTTTTTGACAGCATTTTTCCCTCTAAGCACTGTCATTGTTGCAATCATAAGCTCATTCGCAGTGTCTGAGATATTGTCGTTGGGAAAGGCCTTTCACAAAGCTGAAAATGGATATCAACTCATTGTCTCCGACGACACCGCCGGAATGGAGCATCCCACCGGAATGTGGACTCAAGCCAGGCCATTTATTGCAGTGATTCTTCAGCAGTTCATCACTGCCGGAATGGTCATCATTTCCAAGTTTGCTCTTAACCAAGGACTCAACCAACACGTTTTAGTCGTGTATCGTTACGCCATTGCCACTGTTGTTGTCGCTCCTTTAGCTCTCGTCTTCGAAAGGAAAGTGAGACCCAAGATGACTTGGTCTGTTTTTGGGAAGATTGTCTTGCTCGGATTATTGGAGCCTGCACTCGACCAAAACTTATATTACACGGGCATGAAGTACACTACAGCAACTTTCGCCTCTGCTATGACCAACATGGTCCCTGGTCTTATCTTCCTCCTAGCTTGGATTGTTCGGCTGGAGAAGGTTAACGTAAGGCAGTTGTCAAGCCAGGCAAAGATATTAGGGACAGTGGTAGCGGTGGGAGGGGCTATGATAATGACTATGGTAAGGGGGCCAATTGTGAGCCTGCCATGGACAAAGGACACCCTCCTCCATCACTCTTCTGCAGCTGCAGTCAGCCAGCATGATTTTCTCAAGGGTGCTCTCATGATCACTACAGGCTGCATTTTTTGGTCTCTCTCCCTAACAGCTTTGATATGCTCCACCGGCGCCGTGCAAGCCTCAGTGATAGCTTTGGGAATGGAAAGGCACAATCCTGCTGCCTGGTCATTACATTTAGATTCCACCCTCTTAGCTCCTTTATACAGTGGAATCATGTCTTCAGGGGTCTCATATACTATTCAAGCAGCGATAATGAAAACGAAAGGGCCAGTTTTTGCAAGTACATTTAGTCCCCTAAGCATGGTCATTGTTGCAATCATCAGTTCATTCGCATTATCTGAGATATTATACTTTGGAAGGGTTCTTGGAGCAGCTGTAATTATTACAGGTCTTTATCTAGTTCTGTGGGGGAAAATCAAGGATCAGGCTCCATACAAGTCGGATATTGAGAAGATAGCCCCATCCGATCAGAAACGGACTGCCATAACCGACATACCTAAGACTTCAGATAAAGAACTTGTAGTTGATCTTGCTAGAATAAAGACAGTGGATGGTTCTGTTTGA 3627 43.89 MRYHCTKRKMSFAHRSLVNGHMKSKLDPLGLEERKIPDELDLAHNGFSEADLDRDFFWGMWKMSGFLSESRPTQTLRSVLIRLEHFLIRGESKWLRQTGLVVMARLERFLQKSDDNPLLTPEMDPTLRKQIQECNWQVVNASTSVNYFDVLRRQFDDVRNHSGFDKYGTRLSALSRTKICTLIVKKVHLESLRWIAIIKAFYAFIRIGISTECLRNHTERERGREREREGEMGQEGQMFEKVKPYLGAIALRFASAGMSIISKAALNQGMNQLVTIVYRYSIGAIVVAPFAFVLDRKIRPKMTLRIFGKILLLGLLEPVIAQSLIYSGTKYTTATFATAMCNILPAFAFLMAWICRMEKVNIRRLRSQAKILGTLVTVGGAMMMTLLKGPMLNLPWTKENHIPHSYSTLANKQEPVKAAIVITISSICSSAFTILLAHTIRSYPAELTLTTFICLAGAVESTILALAFEWNNPAAWALHADSILLAALYGNNILWNCLLYPRSGGEAKRTCVCNCIQSSQHGRSCCDKFIHICRETALRKELSGALKQAKPYLAAILLRFVAAGLIVIAKIALNEGMSPQVYSLYRYCVAAIVVAPFALLFDSSVVIPNTYFTGLKFVSPTFSIAMSNAVPALSFFFAWIFRMEKVDIRRVSSWAKILGTAVTVGGAMTMIFVRHPTLSFGWTKGADSQHHSSTDANNQDYRFKGVILVTISCVSSSLSCVLQAIVLKSYPVGLSLTVLVSLVGVVEGSVIALAMEWNNPAAWSIHFDFQLLAILYAGILISGLSYYVQGVVMEAKGAVFLTAFFPLSTVIVAIISSFAVSEILSLGKAFHKAENGYQLIVSDDTAGMEHPTGMWTQARPFIAVILQQFITAGMVIISKFALNQGLNQHVLVVYRYAIATVVVAPLALVFERKVRPKMTWSVFGKIVLLGLLEPALDQNLYYTGMKYTTATFASAMTNMVPGLIFLLAWIVRLEKVNVRQLSSQAKILGTVVAVGGAMIMTMVRGPIVSLPWTKDTLLHHSSAAAVSQHDFLKGALMITTGCIFWSLSLTALICSTGAVQASVIALGMERHNPAAWSLHLDSTLLAPLYSGIMSSGVSYTIQAAIMKTKGPVFASTFSPLSMVIVAIISSFALSEILYFGRVLGAAVIITGLYLVLWGKIKDQAPYKSDIEKIAPSDQKRTAITDIPKTSDKELVVDLARIKTVDGSV 1208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19291497 19316830 - Cp4.1LG01g24040.1 Cpe01g02280 463593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02280 1208 PANTHER WAT1-RELATED PROTEIN 856 1168 - -
Cpe01g02280 1208 PANTHER WAT1-RELATED PROTEIN 601 829 - -
Cpe01g02280 1208 PANTHER WAT1-RELATED PROTEIN 240 491 IPR030184 GO:0016021|GO:0022857
Cpe01g02280 1208 PANTHER WAT1-RELATED PROTEIN 856 1168 IPR030184 GO:0016021|GO:0022857
Cpe01g02280 1208 PANTHER WAT1-RELATED PROTEIN 547 605 IPR030184 GO:0016021|GO:0022857
Cpe01g02280 1208 PANTHER WAT1-RELATED PROTEIN 601 829 IPR030184 GO:0016021|GO:0022857
Cpe01g02280 1208 PANTHER WAT1-RELATED PROTEIN 547 605 - -
Cpe01g02280 1208 PANTHER WAT1-RELATED PROTEIN 240 491 - -
Cpe01g02280 1208 SUPERFAMILY Multidrug resistance efflux transporter EmrE 278 386 - -
Cpe01g02280 1208 Pfam EamA-like transporter family 244 384 IPR000620 GO:0016020|GO:0016021
Cpe01g02280 1208 Pfam EamA-like transporter family 862 1000 IPR000620 GO:0016020|GO:0016021
Cpe01g02280 1208 Pfam EamA-like transporter family 1046 1156 IPR000620 GO:0016020|GO:0016021
Cpe01g02280 1208 SUPERFAMILY Multidrug resistance efflux transporter EmrE 894 1001 - -
Cpe01g02280 1208 SUPERFAMILY Multidrug resistance efflux transporter EmrE 1080 1160 - -
Cpe01g02280 1208 Gene3D TPP helical domain 11 82 - -
Cpe01g02280 1208 Gene3D - 83 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00191 Cpe-Chr1:1070761 Cpe01g02280 Cpe-Chr1:19291497 7.88E-26 dispersed
Cpe01g00192 Cpe-Chr1:1083179 Cpe01g02280 Cpe-Chr1:19291497 2.10E-71 dispersed
Cpe01g01103 Cpe-Chr1:6513013 Cpe01g02280 Cpe-Chr1:19291497 1.04E-87 dispersed
Cpe01g01576 Cpe-Chr1:9593628 Cpe01g02280 Cpe-Chr1:19291497 1.70E-35 dispersed
Cpe01g02043 Cpe-Chr1:17350414 Cpe01g02280 Cpe-Chr1:19291497 1.40E-89 dispersed
Cpe01g02280 Cpe-Chr1:19291497 Cpe06g00635 Cpe-Chr6:3930842 3.08E-52 dispersed
Cpe01g02361 Cpe-Chr1:19749331 Cpe01g02280 Cpe-Chr1:19291497 1.06E-19 dispersed
Cpe05g00250 Cpe-Chr5:1423194 Cpe01g02280 Cpe-Chr1:19291497 2.11E-20 dispersed
Cpe13g00914 Cpe-Chr13:7778603 Cpe01g02280 Cpe-Chr1:19291497 2.50E-11 dispersed
Cpe01g01102 Cpe-Chr1:6504796 Cpe01g02280 Cpe-Chr1:19291497 1.33E-25 wgd
Cpe01g02280 Cpe-Chr1:19291497 Cpe10g00870 Cpe-Chr10:4902433 1.03E-77 wgd
Cpe01g02280 Cpe-Chr1:19291497 Cpe13g00840 Cpe-Chr13:7414496 8.87E-78 wgd
Cpe01g02280 Cpe-Chr1:19291497 Cpe19g00374 Cpe-Chr19:3365005 2.34E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02280 - - csv:101222430 585.874