Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02293 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCACCTCCAAGGAAGTGGCTGTGAGACTAATAACGGCCAACACCTTCCGCCGACGGCACAGCCAGCTGCAGCTGGCGGTGGCGGAGGTGGGGGTGGGGATAGAGGTGGTGGAGGTGGTGTACCTAGCTCGATCCGACCTGGGTCGATGACGGATCGAGCTAGGATGGCGAAGATACCGCAACCGGAAGCGGGGTTAAAATGCCCTAGATGTGAGTCAACCAACACGAAGTTTTGTTACTTCAACAACTATAGCCTCACTCAACCGCGCCATTTTTGCAAGACCTGTCGTCGGTACTGGACGAGAGGTGGGGCGATGAGGAATGTACCGGTTGGGGGCGGGTGTCGACGGTCGAGTAAGAGAAGCAGCAAAGGAGGGAGTAACCGGTCGAAATCTCCAGCGGGTTCGAGTACTTCAACGAGCACGGTGTCATCAAACAGTTGCACAACAGATATCATTAGCCATCAATTGGGTCCTCCTCCGCCAACCCATTTCCCATTTTTGGCTCCAAATTTACACAATCTTAGTGATTTTGGGAACATTGGGTTAAACTTTGAAGGCCTTCAAATCCCCAATTCATCAGGAGGGGAATCAACAATTTTATCAAGTGGAATCACGGATCATACCCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGAAGATCATCATAATCATCATCATCATCAACAACAACAACCAGCTGATATCTCAAAGCCATTACTGGACAATGGGTTTAGTACCACAACTCATCTGTTGGGTACCACAAATGGCAGCATGAAACTCATGGAGGATACTCAAGGGATTAACAATTTGTCAAGAAATTTTCTGGGAATTCAACCAAATGATCAGTTCTGGAATTCAATTACAACCACAACACCTGGGAACATTGCTTGGACAGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTACCCATCTCTTATGA 1047 46.23 MVFSSVPVFLDPPNWPSQQPNHLQGSGCETNNGQHLPPTAQPAAAGGGGGGGGDRGGGGGVPSSIRPGSMTDRARMAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPAGSSTSTSTVSSNSCTTDIISHQLGPPPPTHFPFLAPNLHNLSDFGNIGLNFEGLQIPNSSGGESTILSSGITDHTQWKIPFFANLHQQNGMYSNFMAEDHHNHHHHQQQQPADISKPLLDNGFSTTTHLLGTTNGSMKLMEDTQGINNLSRNFLGIQPNDQFWNSITTTTPGNIAWTDQISDHFNSTSSTTHLL 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19379956 19381994 + Cp4.1LG01g23930.1 Cpe01g02293 463606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02293 348 MobiDBLite consensus disorder prediction 145 165 - -
Cpe01g02293 348 MobiDBLite consensus disorder prediction 127 165 - -
Cpe01g02293 348 Pfam Dof domain, zinc finger 86 140 IPR003851 GO:0003677|GO:0006355
Cpe01g02293 348 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 324 IPR045174 GO:0003700|GO:0006355
Cpe01g02293 348 MobiDBLite consensus disorder prediction 1 70 - -
Cpe01g02293 348 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 6 324 - -
Cpe01g02293 348 ProSitePatterns Zinc finger Dof-type signature. 88 124 IPR003851 GO:0003677|GO:0006355
Cpe01g02293 348 ProSiteProfiles Zinc finger Dof-type profile. 86 140 IPR003851 GO:0003677|GO:0006355
Cpe01g02293 348 MobiDBLite consensus disorder prediction 11 38 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02293 - - - cmo:103498163 472.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00186 Cpe-Chr1:1055284 Cpe01g02293 Cpe-Chr1:19379956 6.61E-49 dispersed
Cpe01g02293 Cpe-Chr1:19379956 Cpe02g01240 Cpe-Chr2:11148513 6.61E-60 dispersed
Cpe01g02293 Cpe-Chr1:19379956 Cpe10g00881 Cpe-Chr10:4961166 1.17E-41 wgd
Cpe01g02293 Cpe-Chr1:19379956 Cpe13g00850 Cpe-Chr13:7470504 2.21E-149 wgd
Cpe01g02293 Cpe-Chr1:19379956 Cpe16g00602 Cpe-Chr16:6669904 1.44E-48 wgd
Cpe01g02293 Cpe-Chr1:19379956 Cpe19g00362 Cpe-Chr19:3293086 1.02E-30 wgd
Cpe01g02293 Cpe-Chr1:19379956 Cpe05g00913 Cpe-Chr5:6006866 4.93E-50 wgd
Cpe01g02293 Cpe-Chr1:19379956 Cpe08g01160 Cpe-Chr8:8615889 2.14E-47 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe20g00461 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT1G29160 57.2 3.2e-45 178.7
Cpe19g01067 CCT,CST 11 160 C2C2-Dof Transcription Factor Family AT1G29160 53.3 2.6e-39 159.1
Cpe10g00145 CCT,CST 21 158 C2C2-Dof Transcription Factor Family AT1G29160 54.9 1.1e-37 153.7
Cpe20g00461 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT2G34140 56.2 1.8e-45 179.5
Cpe19g01067 CCT,CST 11 160 C2C2-Dof Transcription Factor Family AT2G34140 50.9 8.1e-38 154.1
Cpe01g02293 . 1 138 C2C2-Dof Transcription Factor Family AT2G37590 67.4 8.9e-41 164.9
Cpe08g01160 CCT,CST,ECH 1 126 C2C2-Dof Transcription Factor Family AT2G37590 68.8 3.2e-38 156.4
Cpe02g01240 . 57 131 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.6e-37 152.5
Cpe13g00850 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 59.6 1.7e-36 150.6
Cpe20g00813 CST 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 1.7e-36 150.6
Cpe04g01497 CCT,CST,ECH 143 489 C2C2-Dof Transcription Factor Family AT3G47500 52.4 1.2e-83 307.8
Cpe08g01160 CCT,CST,ECH 1 126 C2C2-Dof Transcription Factor Family AT5G02460 66.7 5.9e-39 159.1
Cpe20g00813 CST 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 3.8e-38 156.4
Cpe02g01240 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 61.2 8.5e-38 155.2
Cpe10g00881 CCT,CST,ECH 43 116 C2C2-Dof Transcription Factor Family AT5G02460 86.5 2.1e-36 150.6
Cpe01g02293 . 1 138 C2C2-Dof Transcription Factor Family AT5G02460 63.9 2.7e-36 150.2
Cpe13g00850 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 59.9 2.7e-36 150.2
Cpe10g00881 CCT,CST,ECH 19 128 C2C2-Dof Transcription Factor Family AT3G55370 65.5 1.1e-36 151.4
Cpe04g01443 CCT,CST 26 313 C2C2-Dof Transcription Factor Family AT5G60850 52.3 1.4e-48 190.7
Cpe18g00719 CCT 26 318 C2C2-Dof Transcription Factor Family AT5G60850 53.7 2.0e-47 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48937 PF02701 zf-Dof 4.30E-31 No_clan Cpe TF