Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02293 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCACCTCCAAGGAAGTGGCTGTGAGACTAATAACGGCCAACACCTTCCGCCGACGGCACAGCCAGCTGCAGCTGGCGGTGGCGGAGGTGGGGGTGGGGATAGAGGTGGTGGAGGTGGTGTACCTAGCTCGATCCGACCTGGGTCGATGACGGATCGAGCTAGGATGGCGAAGATACCGCAACCGGAAGCGGGGTTAAAATGCCCTAGATGTGAGTCAACCAACACGAAGTTTTGTTACTTCAACAACTATAGCCTCACTCAACCGCGCCATTTTTGCAAGACCTGTCGTCGGTACTGGACGAGAGGTGGGGCGATGAGGAATGTACCGGTTGGGGGCGGGTGTCGACGGTCGAGTAAGAGAAGCAGCAAAGGAGGGAGTAACCGGTCGAAATCTCCAGCGGGTTCGAGTACTTCAACGAGCACGGTGTCATCAAACAGTTGCACAACAGATATCATTAGCCATCAATTGGGTCCTCCTCCGCCAACCCATTTCCCATTTTTGGCTCCAAATTTACACAATCTTAGTGATTTTGGGAACATTGGGTTAAACTTTGAAGGCCTTCAAATCCCCAATTCATCAGGAGGGGAATCAACAATTTTATCAAGTGGAATCACGGATCATACCCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGAAGATCATCATAATCATCATCATCATCAACAACAACAACCAGCTGATATCTCAAAGCCATTACTGGACAATGGGTTTAGTACCACAACTCATCTGTTGGGTACCACAAATGGCAGCATGAAACTCATGGAGGATACTCAAGGGATTAACAATTTGTCAAGAAATTTTCTGGGAATTCAACCAAATGATCAGTTCTGGAATTCAATTACAACCACAACACCTGGGAACATTGCTTGGACAGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTACCCATCTCTTATGA 1047 46.23 MVFSSVPVFLDPPNWPSQQPNHLQGSGCETNNGQHLPPTAQPAAAGGGGGGGGDRGGGGGVPSSIRPGSMTDRARMAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPAGSSTSTSTVSSNSCTTDIISHQLGPPPPTHFPFLAPNLHNLSDFGNIGLNFEGLQIPNSSGGESTILSSGITDHTQWKIPFFANLHQQNGMYSNFMAEDHHNHHHHQQQQPADISKPLLDNGFSTTTHLLGTTNGSMKLMEDTQGINNLSRNFLGIQPNDQFWNSITTTTPGNIAWTDQISDHFNSTSSTTHLL 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19379956 19381994 + Cp4.1LG01g23930.1 Cpe01g02293 463606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02293 348 MobiDBLite consensus disorder prediction 145 165 - -
Cpe01g02293 348 MobiDBLite consensus disorder prediction 127 165 - -
Cpe01g02293 348 Pfam Dof domain, zinc finger 86 140 IPR003851 GO:0003677|GO:0006355
Cpe01g02293 348 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 324 IPR045174 GO:0003700|GO:0006355
Cpe01g02293 348 MobiDBLite consensus disorder prediction 1 70 - -
Cpe01g02293 348 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 6 324 - -
Cpe01g02293 348 ProSitePatterns Zinc finger Dof-type signature. 88 124 IPR003851 GO:0003677|GO:0006355
Cpe01g02293 348 ProSiteProfiles Zinc finger Dof-type profile. 86 140 IPR003851 GO:0003677|GO:0006355
Cpe01g02293 348 MobiDBLite consensus disorder prediction 11 38 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00186 Cpe-Chr1:1055284 Cpe01g02293 Cpe-Chr1:19379956 6.61E-49 dispersed
Cpe01g02293 Cpe-Chr1:19379956 Cpe02g01240 Cpe-Chr2:11148513 6.61E-60 dispersed
Cpe01g02293 Cpe-Chr1:19379956 Cpe10g00881 Cpe-Chr10:4961166 1.17E-41 wgd
Cpe01g02293 Cpe-Chr1:19379956 Cpe13g00850 Cpe-Chr13:7470504 2.21E-149 wgd
Cpe01g02293 Cpe-Chr1:19379956 Cpe16g00602 Cpe-Chr16:6669904 1.44E-48 wgd
Cpe01g02293 Cpe-Chr1:19379956 Cpe19g00362 Cpe-Chr19:3293086 1.02E-30 wgd
Cpe01g02293 Cpe-Chr1:19379956 Cpe05g00913 Cpe-Chr5:6006866 4.93E-50 wgd
Cpe01g02293 Cpe-Chr1:19379956 Cpe08g01160 Cpe-Chr8:8615889 2.14E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48937 PF02701 zf-Dof 4.30E-31 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02293 - - cmo:103498163 472.626