Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02297 ATGGCAGATGGAGAGGACATCCAGCCTCTTGTATGCGATAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGTGATGATGCTCCCAGGGCAGTTTTCCCTAGCATTGTTGGCCGACCTCGTCACACCGGCGTGATGGTCGGCATGGGCCAGAAAGATGCTTATGTAGGTGATGAAGCTCAATCCAAGCGTGGTATTTTGACCCTGAAATACCCAATTGAGCATGGTATTGTTAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACGTTCTATAATGAGCTTCGTGTTGCCCCAGAGGAGCATCCTGTTCTCCTAACTGAGGCCCCTCTTAACCCCAAAGCTAACCGTGAAAAGATGACCCAAATCATGTTTGAGACCTTTAACACTCCTGCCATGTATGTAGCTATTCAAGCTGTCCTCTCACTATATGCCAGTGGTCGAACAACTGGAATTGTGATGGATTCTGGTGATGGTGTGAGTCATACAGTCCCCATTTATGAGGGGTATGCTCTCCCACATGCCATTCTTCGACTTGACCTTGCTGGCCGTGATCTTACTGATAACTTGATGAAAATTCTCACGGAGCGTGGATACTCATTCACGACCACAGCAGAGCGAGAAATTGTGAGGGATATGAAGGAAAAGCTTTCATATATTGCACTTGACTATGAGCAGGAACTTGAAACTTCTAAGACCAGTTCATCAGTTGAAAAGAGCTATGAGTTGCCTGATGGACAAGTCATCACGATCGGTGCCGAACGTTTTAGATGCCCGGAAGTTCTCTTCCAGCCATCCATGATCGGAATGGAAGCTGCGGGCATTCATGAAACTACATATAATTCCATCATGAAGTGTGACGTGGATATTAGGAAGGATCTGTATGGTAATATCGTCCTCTCCGGTGGTTCGACCATGTTTACGGGCATTGCCGATAGAATGAGCAAGGAAATCTCTGCATTGGCGCCGAGCAGCATGAAGATCAAGGTGGTGGCACCTCCAGAAAGAAAGTACAGTGTTTGGATTGGTGGCTCCATCTTGGCTTCTCTGAGTACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAGTCTGGGCCATCGATTGTGCACAGGAAGTGCTTCTAA 1134 47.09 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19396785 19399181 + Cp4.1LG01g23950.1 Cpe01g02297 463610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02297 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cpe01g02297 377 PRINTS Actin signature 28 37 IPR004000 -
Cpe01g02297 377 PRINTS Actin signature 51 62 IPR004000 -
Cpe01g02297 377 PRINTS Actin signature 63 85 IPR004000 -
Cpe01g02297 377 PRINTS Actin signature 117 130 IPR004000 -
Cpe01g02297 377 PRINTS Actin signature 142 161 IPR004000 -
Cpe01g02297 377 PRINTS Actin signature 238 254 IPR004000 -
Cpe01g02297 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cpe01g02297 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cpe01g02297 377 PANTHER ACTIN-97 1 376 - -
Cpe01g02297 377 SUPERFAMILY Actin-like ATPase domain 6 154 IPR043129 -
Cpe01g02297 377 Gene3D - 140 340 - -
Cpe01g02297 377 SMART actin_3 7 377 IPR004000 -
Cpe01g02297 377 Gene3D - 10 371 - -
Cpe01g02297 377 PANTHER ACTIN 1 376 IPR004000 -
Cpe01g02297 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cpe01g02297 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cpe01g02297 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cpe01g02297 377 Pfam Actin 5 377 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02297 Cpe-Chr1:19396785 Cpe11g00097 Cpe-Chr11:521247 0 dispersed
Cpe18g00750 Cpe-Chr18:7247328 Cpe01g02297 Cpe-Chr1:19396785 7.94E-71 transposed
Cpe01g01096 Cpe-Chr1:6478315 Cpe01g02297 Cpe-Chr1:19396785 0 wgd
Cpe01g02297 Cpe-Chr1:19396785 Cpe10g00886 Cpe-Chr10:4982089 0 wgd
Cpe01g02297 Cpe-Chr1:19396785 Cpe13g00859 Cpe-Chr13:7503106 0 wgd
Cpe01g02297 Cpe-Chr1:19396785 Cpe16g00608 Cpe-Chr16:6696018 0 wgd
Cpe01g02297 Cpe-Chr1:19396785 Cpe19g00354 Cpe-Chr19:3094670 0 wgd
Cpe01g02297 Cpe-Chr1:19396785 Cpe05g00918 Cpe-Chr5:6032163 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02297 K10355 - twl:119989292 744.962