Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02305 ATGGCGGCAACTGTTTCAACAGCATTGCTCTCTTTCTTGCTAATAATGTCGTTGGCCGTGGAATGTAGACAACATAACGGAGTTTACGGCGGCGGCCCTTGGCAGAGCGCCCACGCCACATTCTACGGCGGCAATGACGCCTCCGGCACTATGGGGGGCGCGTGTGGTTACGGCAACTTATACAGCCAGGGGTACGGCGTGAACACGGCAGCGTTGAGCACAGCTCTGTTCAACGACGGGTCCAGCTGTGGTGCTTGTTTCCAAATCAAGTGCGTGAATGACCCACAATGGTGCCACGCTGGAAACCCCTCGATTTTCGTGACAGCCACCAACTTTTGTCCTCCCAATTATGCACTCCCTAATGACAACGGCGGGTGGTGCAATCCTCCTCGCCCTCACTTCGACCTATCCATGCCCATGTTCCTCAAAATCGCCCAGTACCGCGCCGGGATCGTCCCCGTCTCGTTTCGCAGGTAA 477 56.18 MAATVSTALLSFLLIMSLAVECRQHNGVYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGSSCGACFQIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRR 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19451816 19452399 - Cp4.1LG01g23750.1 Cpe01g02305 463618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02305 158 PANTHER EXPANSIN-A15 9 158 IPR002963 GO:0009664
Cpe01g02305 158 SUPERFAMILY Barwin-like endoglucanases 33 158 IPR036908 -
Cpe01g02305 158 PANTHER EXPANSIN-A6 9 158 - -
Cpe01g02305 158 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Cpe01g02305 158 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Cpe01g02305 158 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Cpe01g02305 158 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Cpe01g02305 158 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Cpe01g02305 158 Gene3D - 18 158 IPR036908 -
Cpe01g02305 158 Pfam Lytic transglycolase 69 156 IPR009009 -
Cpe01g02305 158 SMART dpbb_1 69 156 IPR007112 -
Cpe01g02305 158 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Cpe01g02305 158 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Cpe01g02305 158 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Cpe01g02305 158 PRINTS Expansin/Lol pI family signature 149 158 IPR007118 GO:0005576
Cpe01g02305 158 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 158 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00178 Cpe-Chr1:1002796 Cpe01g02305 Cpe-Chr1:19451816 4.56E-90 dispersed
Cpe01g02305 Cpe-Chr1:19451816 Cpe02g01228 Cpe-Chr2:11088874 1.14E-88 dispersed
Cpe01g01088 Cpe-Chr1:6418949 Cpe01g02305 Cpe-Chr1:19451816 6.92E-69 wgd
Cpe01g02305 Cpe-Chr1:19451816 Cpe10g00890 Cpe-Chr10:5008797 1.04E-86 wgd
Cpe01g02305 Cpe-Chr1:19451816 Cpe16g00619 Cpe-Chr16:6736333 9.30E-90 wgd
Cpe01g02305 Cpe-Chr1:19451816 Cpe19g00348 Cpe-Chr19:3058720 2.54E-87 wgd
Cpe01g02305 Cpe-Chr1:19451816 Cpe05g00925 Cpe-Chr5:6080077 3.53E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02305 - - cpap:110826208 282.337