Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02313 ATGGCGGCTTCCTTTTTCTTTTTGCTTCTTTTACCACTCTCTTTCTTCTTCACTGATTCCTCCTTGGCTGAAGTTCAAGATCCTCATCTTGTCGTTCAAGAAGTTCAAAGAACAGGAAACCCAATAGACGACTGCTGGAGATGCGACCCCAATTGGGAAACCAACCGAAAGCGCTTAGCCGACTGCGCCATTGGGTTCGGCAAAAACGCCATCGGCGGCAGAAACGGCCGCTTCTACGTCGTCACAGACGCCGGCGACGACGACCCTCTCAACCCCAGACCAGGAACCCTCCGCCACGCCGTCATCCAAAACGAGCCCTTATGGATCATCTTCAAGCGTGACATGGTAATCCAACTCAGACAAGAACTGGTGATGAACTCGTTCAAGACCATCGACGGGCGTGGGGCCAGCGTGCATGTGGCAGGTGGGCCATGCATCACCATCCACTACGCCACAAACATCATAATCCACGGCATCCACATACATGACTGTAAGAGAGGGGGGAATGGTAACATACGGGACTCCCCACAGCACTCCGGGTGGTGGACTATATCGGACGGTGATGGAGTGTCGATCTTTGGTGGGAAGCATATTTGGGTTGACCATTGTTCCTTGTCTAATTGTAACGATGGGTTGATCGACGCGATTCATGGTTCGACGGCGATCACGATTTCGAATAATTACATGACTCATCATGATAAAGTGATGCTATGCAGGCATGGGTATTTCCATGTGGTGAACAACGATTACACCCACTGGGAAATGTACGCAATTGGAGGGAGTGCTTCACCGACAATATACAGTCAAGGCAACAGATTTTTGGCGCCGGACGTCCGATACCGAAAGGAGGTGACAAAGCACGAGGACGCACCGGAGAGTGAGTGGCGTCACTGGAACTGGCGGTCAGAGGGCGACATGATGTTGAACGGCGCCTATTTTCGCCAGTCCGGCGCCGGCGCTGCGTCCAGCTACGCAAGAGCTTACAGTCTGAGCGCTAGACCCTCCTCCCTCGTTGGTTCTATCACGGTCACAGCCGGCGCCCTCAACTGCCGCAGAGGCTCCCGTTGCTAG 1071 53.41 MAASFFFLLLLPLSFFFTDSSLAEVQDPHLVVQEVQRTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGRNGRFYVVTDAGDDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIQLRQELVMNSFKTIDGRGASVHVAGGPCITIHYATNIIIHGIHIHDCKRGGNGNIRDSPQHSGWWTISDGDGVSIFGGKHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPDVRYRKEVTKHEDAPESEWRHWNWRSEGDMMLNGAYFRQSGAGAASSYARAYSLSARPSSLVGSITVTAGALNCRRGSRC 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19493905 19497538 - Cp4.1LG01g23700.1 Cpe01g02313 463626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02313 356 PANTHER PECTATE LYASE 4 237 - -
Cpe01g02313 356 PANTHER PECTATE LYASE 238 353 - -
Cpe01g02313 356 SUPERFAMILY Pectin lyase-like 36 351 IPR011050 -
Cpe01g02313 356 Gene3D - 39 239 IPR012334 -
Cpe01g02313 356 Gene3D - 240 349 IPR012334 -
Cpe01g02313 356 Pfam Pectate lyase 120 239 IPR002022 -
Cpe01g02313 356 PRINTS Pollen allergen Amb family signature 186 207 IPR018082 -
Cpe01g02313 356 PRINTS Pollen allergen Amb family signature 62 79 IPR018082 -
Cpe01g02313 356 PRINTS Pollen allergen Amb family signature 122 138 IPR018082 -
Cpe01g02313 356 PRINTS Pollen allergen Amb family signature 86 111 IPR018082 -
Cpe01g02313 356 PANTHER PECTATE LYASE 18-RELATED 4 237 IPR045032 GO:0030570
Cpe01g02313 356 PANTHER PECTATE LYASE 18-RELATED 238 353 IPR045032 GO:0030570
Cpe01g02313 356 SMART amb_all 114 279 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02313 Cpe-Chr1:19493905 Cpe20g00339 Cpe-Chr20:1918062 0 dispersed
Cpe20g00347 Cpe-Chr20:1966050 Cpe01g02313 Cpe-Chr1:19493905 1.86E-92 dispersed
Cpe01g02313 Cpe-Chr1:19493905 Cpe09g00992 Cpe-Chr9:8789668 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02313 K01728 - csv:101217834 629.402