Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02327 ATGGAGTCCGGTGATGGGTTATGTTTAAAAGAGTTTGATTTGGATGCTAAGTGGCTGGTCGATCCGAAGCGAATCCTTGTTGGGCCAAGGATTGGGGAGGGTGCACATGGCAAAGTGCACAAGGGGAAATATAAAAACGAAAATGTTGCTATTAAAATAATTCGAAGAGGTGAAACTCCAGAAGAAATTGCAAAAACTGAGGCACGCTTTGCTCGAGAGGTTGCAATGTTATCCAAAGTTCAGCACAAGAATCTTGCAAAGTTTATAGGTGCTTGCAAGGAGCCCATTATGGTGATAGTGACTGAGCTTCTTTTAGGCGGTACATTACGAAAGTACTTGTTGAGTATACGGCCAAGGTGCTTGGACTTGCACGAAGCAGCTTGTTTTGCACTTGATATAGCACGCGCAATGGAATGCCTGCATTCCCATGGTATCATTCACCGCGATCTCAAACCTGAGAATTTGATCTTGACTGGAGACCACAAAACTGTTAAGCTTACAGACTTTGGTTTGGCTAGAGAAGAGTCAGTAACAGAAATGATGACAGCTGAAACTGGGACTTACAGATGGATGGCTCCAGAGCTATACAGTACGGTCACTTTAAGAAATGGAGAGAAGAAGCATTACAATCACAAGAATTTCCGACCGAATGCCGAGAACCTCCCGGAGGATTTGGCCTCGATTATAACTTCCTGTTGGACAGAGGATCCGAATACTCGGCCGAACTTCAGCGAAATCATACAGATGCTCTTGAAATATCTCTCCACCATTCCACAGCCAGAGTATGTTACACCACCAACAATGCAGGCACCTGAGAATGCAGTGCTGCCACCAGAGTCTCCTGGAACTAGTTCTTTGATGGCAGCCACAAGACGTGGCACGGGGGATGTCCCGAAAAGCGAGATAGAAGAGAAACCAAGCAGTTTCTTCTCATGTTTCTCTGGTAGCTGTTACTGA 957 45.35 MESGDGLCLKEFDLDAKWLVDPKRILVGPRIGEGAHGKVHKGKYKNENVAIKIIRRGETPEEIAKTEARFAREVAMLSKVQHKNLAKFIGACKEPIMVIVTELLLGGTLRKYLLSIRPRCLDLHEAACFALDIARAMECLHSHGIIHRDLKPENLILTGDHKTVKLTDFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRNGEKKHYNHKNFRPNAENLPEDLASIITSCWTEDPNTRPNFSEIIQMLLKYLSTIPQPEYVTPPTMQAPENAVLPPESPGTSSLMAATRRGTGDVPKSEIEEKPSSFFSCFSGSCY 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19575002 19578699 - Cp4.1LG01g23540.1 Cpe01g02327 463640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02327 318 PANTHER SERINE-THREONINE PROTEIN KINASE 212 293 - -
Cpe01g02327 318 PANTHER SERINE-THREONINE PROTEIN KINASE 1 212 - -
Cpe01g02327 318 Pfam Protein tyrosine and serine/threonine kinase 210 250 IPR001245 GO:0004672|GO:0006468
Cpe01g02327 318 Gene3D Transferase(Phosphotransferase) domain 1 208 264 - -
Cpe01g02327 318 SUPERFAMILY Protein kinase-like (PK-like) 17 279 IPR011009 -
Cpe01g02327 318 MobiDBLite consensus disorder prediction 276 302 - -
Cpe01g02327 318 Pfam Protein kinase domain 30 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g02327 318 ProSitePatterns Protein kinases ATP-binding region signature. 31 52 IPR017441 GO:0005524
Cpe01g02327 318 ProSiteProfiles Protein kinase domain profile. 25 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g02327 318 PANTHER BNAA06G32000D PROTEIN 212 293 - -
Cpe01g02327 318 PANTHER BNAA06G32000D PROTEIN 1 212 - -
Cpe01g02327 318 Gene3D Phosphorylase Kinase; domain 1 13 104 - -
Cpe01g02327 318 CDD STKc_MAP3K-like 31 250 - -
Cpe01g02327 318 Gene3D Transferase(Phosphotransferase) domain 1 105 207 - -
Cpe01g02327 318 SMART serkin_6 25 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g02327 318 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02327 Cpe03g00588 CCT
Cpe01g02327 Cpe03g00588 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02327 Cpe-Chr1:19575002 Cpe08g01255 Cpe-Chr8:9088537 2.82E-115 dispersed
Cpe01g02327 Cpe-Chr1:19575002 Cpe18g00870 Cpe-Chr18:7964351 1.01E-134 wgd
Cpe01g02327 Cpe-Chr1:19575002 Cpe03g00588 Cpe-Chr3:3541980 9.11E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62187 PF00069 Pkinase 5.50E-38 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02327 - - csv:101220915 520.776