Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02332 ATGACGCAAAAAATGGCTTCTTCATCCAGCTACTCCAATTCACCATGTGCAGCATGCAAGTTCCTCCGAAGAAAATGCTTAGCGGATTGCATATTTGCGCCCTACTTTCCACCCGAAGAGCCCACCAAATTTGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTCCTCCATGAAGTCCACCCCCATCAGCGCGAGGACGCCGTTAATTCTCTTGCCTACGAGGCCGAGGCTCGTATGAAAGACCCCGTCTATGGCTGCGTCGGAGCCATCTCTATCCTTCAGCGACAAGTCATTCGCCTCCAGAAGGAGCTTGACGCTACGAATGCTGATTTGGTACGATATGCTAGCGGGGGCGCTCGCCCGTATGGACGGAGGGCAGCAGCGCAGTCGGGTGTGTGTTTTATTTCCCCCTTGAATAGTAATGATCGTCATGATCCATATTGCCGTGATAAAGAGGAAGAAAATTGA 480 51.04 MTQKMASSSSYSNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLHEVHPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIRLQKELDATNADLVRYASGGARPYGRRAAAQSGVCFISPLNSNDRHDPYCRDKEEEN 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19603996 19605049 + Cp4.1LG01g23420.1 Cpe01g02332 463645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02332 159 Coils Coil 94 114 - -
Cpe01g02332 159 Pfam Lateral organ boundaries (LOB) domain 15 111 IPR004883 -
Cpe01g02332 159 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Cpe01g02332 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 122 - -
Cpe01g02332 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 8 122 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02332 Cpe-Chr1:19603996 Cpe11g00664 Cpe-Chr11:4450407 2.70E-59 dispersed
Cpe01g02332 Cpe-Chr1:19603996 Cpe18g00859 Cpe-Chr18:7908787 1.43E-69 wgd
Cpe01g02332 Cpe-Chr1:19603996 Cpe20g00259 Cpe-Chr20:1458285 7.90E-59 wgd
Cpe01g02332 Cpe-Chr1:19603996 Cpe04g00534 Cpe-Chr4:5794118 1.26E-71 wgd
Cpe01g02332 Cpe-Chr1:19603996 Cpe04g01574 Cpe-Chr4:12321467 1.10E-68 wgd
Cpe01g02332 Cpe-Chr1:19603996 Cpe09g01010 Cpe-Chr9:8933543 9.02E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48940 PF03195 LOB 2.00E-41 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02332 - - csv:101216489 257.684