Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02349 ATGGAGATTCCTTCAGAAAAAAGATATCCAGTGAATGCCAAGGATTATAACTTGCATGAAGAAGTTGGTGAAGGCGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCACTAAAGGAGACTGTCGCTATAAAGGCTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACGATGACTTTGATTGATCATCCAAATTTGTTAAAAGCACATTGTTCCTTCACTGCTGGTCACCACCTCTGGGTTGTGATGCCATACATGTCTGGGGGATCTTGCCTTCATATTATGAAATCTGCTTTTTCTGAAGGTTTTGATGAGCCTGTCATAGCTACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATCTTGCTTGATTCTAATGGTACAGTAAAACTAGCTGATTTTGGAGTCTCGGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACATTTGTTGGAACTCCTTGCTGGATGGCACCGGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCATTTGGAATAACAGCGCTTGAACTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTAATGACATTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGATAGGAAATTTTCTAAGGCAAAGGAGGCTGATCTTCTGGTGCAGAACAAGGCTTTGTATGGAGACAAGGAGCATTTGTCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGATGATATGTCAAACATGGAAGATCTAGATGTACATACAACAACGCAAAGAAACAAGAAGAATGATTTTAGCTTTCCAGTAGAGGGTTCATCCCTTGGAAGTCCGAATCACCGAACTGCTGCCGCTAGTCAGGAGGATGGTTTCAGTGATCTTCATTATTTGGAGAGTTCCCTTGCTTCTTTCCCTACAAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATAAGCACGGACAGTGTAAGGCCAGTCGATAGGGAAAATGGAAGAATCGAGGGTGAGAGTTCAGGGCAAAGTGGTCCCCTACCACGTCATTACATGTCAGAGAATAAGAGGTCTTATAGTGGTTCATTAATTTCTGACAATGCTGTTTCTCCTAAAAAGATTGTTGTAGATGGTGATAGGGATTATGTGCAGTCAAAATTTCCATCTGAACGTAATTTCAGTGGTCCATTATTATATCGCCAAAAAAGAGATACAAATAACATATCATCTGTTGAGGATACATCAGATGGAACAGTAGTTCAATGCAAGGGGCGTTTTAAGGTTACTTCAGCGGAGCTTAGTCCGAAGGGTCCTATGACGGGTTCATTTAGCCCAATCTGTGGAGGGACAATGAGCCCAACATCCCTGAACCTTACGCCTTCTTTACTCCTCCCATCAATGCAATGCATTCTGCAGCAGAACATCCTGCAACGGGAAGAAATCGTTAAATTGATCAAGTATTTGGAACAATTGACTGGCAAGAATCCAGATGTACCAGAGACGGCCACTAATGACCCTCTGCAGGCTACCCCATCAAGTGATGGTTTCTTTGATGTCCAGACACCACCGGCTTCCTTGAGGGAAAGAGAGTTACAGTCTCAGGTCGTCCATCTGCAGCAGAGGATTGATAATCTCAACGAGGAATTAGAGAAGCAGAAGTTGAAAAATGCCGAGTTTGAAAGACACATGATTTCTATGGCAAATAAAGAGAGAACATAA 1881 42.53 MEIPSEKRYPVNAKDYNLHEEVGEGVSATVYKALCIPLKETVAIKALDLEKCNNDLDGIRREVQTMTLIDHPNLLKAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAFSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDRKFSKAKEADLLVQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNMEDLDVHTTTQRNKKNDFSFPVEGSSLGSPNHRTAAASQEDGFSDLHYLESSLASFPTKPLEALKDCFDIYEDISTDSVRPVDRENGRIEGESSGQSGPLPRHYMSENKRSYSGSLISDNAVSPKKIVVDGDRDYVQSKFPSERNFSGPLLYRQKRDTNNISSVEDTSDGTVVQCKGRFKVTSAELSPKGPMTGSFSPICGGTMSPTSLNLTPSLLLPSMQCILQQNILQREEIVKLIKYLEQLTGKNPDVPETATNDPLQATPSSDGFFDVQTPPASLRERELQSQVVHLQQRIDNLNEELEKQKLKNAEFERHMISMANKERT 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19680058 19691247 - Cp4.1LG01g23360.1 Cpe01g02349 463662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02349 626 SMART serkin_6 16 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g02349 626 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 248 - -
Cpe01g02349 626 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 247 623 - -
Cpe01g02349 626 SUPERFAMILY Protein kinase-like (PK-like) 6 237 IPR011009 -
Cpe01g02349 626 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 248 - -
Cpe01g02349 626 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 247 623 - -
Cpe01g02349 626 MobiDBLite consensus disorder prediction 380 408 - -
Cpe01g02349 626 MobiDBLite consensus disorder prediction 314 336 - -
Cpe01g02349 626 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Cpe01g02349 626 ProSiteProfiles Protein kinase domain profile. 16 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g02349 626 Gene3D Transferase(Phosphotransferase) domain 1 97 317 - -
Cpe01g02349 626 Pfam Protein kinase domain 16 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g02349 626 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Cpe01g02349 626 MobiDBLite consensus disorder prediction 550 568 - -
Cpe01g02349 626 Coils Coil 582 616 - -
Cpe01g02349 626 CDD STKc_OSR1_SPAK 14 249 - -
Cpe01g02349 626 MobiDBLite consensus disorder prediction 307 336 - -
Cpe01g02349 626 MobiDBLite consensus disorder prediction 548 568 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02349 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - pop:7487854 826.624
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02349 Cpe13g00900 CCT
Cpe01g02349 Cpe13g00900 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02349 Cpe-Chr1:19680058 Cpe08g00913 Cpe-Chr8:7182865 2.35E-07 dispersed
Cpe01g02349 Cpe-Chr1:19680058 Cpe13g00900 Cpe-Chr13:7689434 0 wgd
Cpe01g02349 Cpe-Chr1:19680058 Cpe03g00565 Cpe-Chr3:3360813 6.48E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1350 . . Bda01g01279 Bda13g01619 Bpe02g01494 Bpe14g00247 . . . . . . . . Sed02g1388 . Cpe13g00900 Bhi06g00518 Tan11g0629 Cmetu09g0153 . . . . . . . . . . . Cone11ag0114 Cone18ag1363 . . Lsi02g01568 Csa05g01916 . . Blo17g00301 Blo18g00333 . . . . Bma01g00975 . . Cmo04g02836 Cmo15g00350 Cma04g02707 Cma15g00341 Car04g02610 Car15g00325 . Cpe01g02349 . . . . . . . Cla09g01858 Cam09g1954 Cec09g2018 Cco09g2111 . . . . . Chy09g00338 Cme09g00387
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe06g00678 CST 1 711 MAP Kinase Kinase Kinase Kinase AT1G53165 59.1 1.4e-213 740.0
Cpe02g00695 CST 1 656 MAP Kinase Kinase Kinase Kinase AT1G53165 53.8 6.5e-187 651.4
Cpe06g00678 CST 1 710 MAP Kinase Kinase Kinase Kinase AT3G15220 60.9 2.0e-220 762.7
Cpe02g00695 CST 1 655 MAP Kinase Kinase Kinase Kinase AT3G15220 55.3 3.4e-191 665.6
Cpe09g00224 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 1.4e-67 255.0
Cpe09g00224 . 4 857 MAP Kinase Kinase Kinase Kinase AT1G69220 57.9 9.2e-241 830.5
Cpe06g00678 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.6 9.4e-68 255.8
Cpe13g00900 CCT,ECH 1 623 MAP Kinase Kinase Kinase Kinase AT5G14720 59.7 2.9e-216 748.8
Cpe01g02349 CCT,ECH 1 623 MAP Kinase Kinase Kinase Kinase AT5G14720 58.0 6.3e-211 731.1
Cpe08g00913 CCT 7 745 MAP Kinase Kinase Kinase Kinase AT4G24100 62.3 2.4e-240 828.9
Cpe14g01014 CCT 7 844 MAP Kinase Kinase Kinase Kinase AT4G24100 51.9 1.2e-210 730.3
Cpe08g00913 CCT 11 746 MAP Kinase Kinase Kinase Kinase AT4G10730 62.0 4.8e-238 821.2
Cpe14g01014 CCT 11 844 MAP Kinase Kinase Kinase Kinase AT4G10730 52.4 6.3e-214 741.1
Cpe08g00913 CCT 5 364 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 1.4e-116 417.5
Cpe14g01014 CCT 226 507 MAP Kinase Kinase Kinase Kinase AT1G70430 59.4 1.0e-95 348.2
Cpe13g00900 CCT,ECH 1 249 MAP Kinase Kinase Kinase Kinase AT1G23700 61.9 6.4e-80 295.4
Cpe01g02349 CCT,ECH 6 249 MAP Kinase Kinase Kinase Kinase AT1G23700 61.9 3.0e-77 286.6
Cpe08g00913 CCT 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 8.9e-74 275.0
Cpe03g01498 . 32 509 MAP Kinase Kinase Kinase Kinase AT4G14480 57.1 2.8e-144 509.2
Cpe13g00900 CCT,ECH 5 249 MAP Kinase Kinase Kinase Kinase AT4G14480 50.4 8.7e-69 258.5
Cpe01g02349 CCT,ECH 5 249 MAP Kinase Kinase Kinase Kinase AT4G14480 50.4 1.4e-66 251.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62188 PF00069 Pkinase 1.10E-49 CL0016 Cpe PK