Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02349 ATGGAGATTCCTTCAGAAAAAAGATATCCAGTGAATGCCAAGGATTATAACTTGCATGAAGAAGTTGGTGAAGGCGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCACTAAAGGAGACTGTCGCTATAAAGGCTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACGATGACTTTGATTGATCATCCAAATTTGTTAAAAGCACATTGTTCCTTCACTGCTGGTCACCACCTCTGGGTTGTGATGCCATACATGTCTGGGGGATCTTGCCTTCATATTATGAAATCTGCTTTTTCTGAAGGTTTTGATGAGCCTGTCATAGCTACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATCTTGCTTGATTCTAATGGTACAGTAAAACTAGCTGATTTTGGAGTCTCGGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACATTTGTTGGAACTCCTTGCTGGATGGCACCGGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCATTTGGAATAACAGCGCTTGAACTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTAATGACATTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGATAGGAAATTTTCTAAGGCAAAGGAGGCTGATCTTCTGGTGCAGAACAAGGCTTTGTATGGAGACAAGGAGCATTTGTCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGATGATATGTCAAACATGGAAGATCTAGATGTACATACAACAACGCAAAGAAACAAGAAGAATGATTTTAGCTTTCCAGTAGAGGGTTCATCCCTTGGAAGTCCGAATCACCGAACTGCTGCCGCTAGTCAGGAGGATGGTTTCAGTGATCTTCATTATTTGGAGAGTTCCCTTGCTTCTTTCCCTACAAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATAAGCACGGACAGTGTAAGGCCAGTCGATAGGGAAAATGGAAGAATCGAGGGTGAGAGTTCAGGGCAAAGTGGTCCCCTACCACGTCATTACATGTCAGAGAATAAGAGGTCTTATAGTGGTTCATTAATTTCTGACAATGCTGTTTCTCCTAAAAAGATTGTTGTAGATGGTGATAGGGATTATGTGCAGTCAAAATTTCCATCTGAACGTAATTTCAGTGGTCCATTATTATATCGCCAAAAAAGAGATACAAATAACATATCATCTGTTGAGGATACATCAGATGGAACAGTAGTTCAATGCAAGGGGCGTTTTAAGGTTACTTCAGCGGAGCTTAGTCCGAAGGGTCCTATGACGGGTTCATTTAGCCCAATCTGTGGAGGGACAATGAGCCCAACATCCCTGAACCTTACGCCTTCTTTACTCCTCCCATCAATGCAATGCATTCTGCAGCAGAACATCCTGCAACGGGAAGAAATCGTTAAATTGATCAAGTATTTGGAACAATTGACTGGCAAGAATCCAGATGTACCAGAGACGGCCACTAATGACCCTCTGCAGGCTACCCCATCAAGTGATGGTTTCTTTGATGTCCAGACACCACCGGCTTCCTTGAGGGAAAGAGAGTTACAGTCTCAGGTCGTCCATCTGCAGCAGAGGATTGATAATCTCAACGAGGAATTAGAGAAGCAGAAGTTGAAAAATGCCGAGTTTGAAAGACACATGATTTCTATGGCAAATAAAGAGAGAACATAA 1881 42.53 MEIPSEKRYPVNAKDYNLHEEVGEGVSATVYKALCIPLKETVAIKALDLEKCNNDLDGIRREVQTMTLIDHPNLLKAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAFSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDRKFSKAKEADLLVQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNMEDLDVHTTTQRNKKNDFSFPVEGSSLGSPNHRTAAASQEDGFSDLHYLESSLASFPTKPLEALKDCFDIYEDISTDSVRPVDRENGRIEGESSGQSGPLPRHYMSENKRSYSGSLISDNAVSPKKIVVDGDRDYVQSKFPSERNFSGPLLYRQKRDTNNISSVEDTSDGTVVQCKGRFKVTSAELSPKGPMTGSFSPICGGTMSPTSLNLTPSLLLPSMQCILQQNILQREEIVKLIKYLEQLTGKNPDVPETATNDPLQATPSSDGFFDVQTPPASLRERELQSQVVHLQQRIDNLNEELEKQKLKNAEFERHMISMANKERT 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19680058 19691247 - Cp4.1LG01g23360.1 Cpe01g02349 463662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02349 626 SMART serkin_6 16 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g02349 626 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 248 - -
Cpe01g02349 626 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 247 623 - -
Cpe01g02349 626 SUPERFAMILY Protein kinase-like (PK-like) 6 237 IPR011009 -
Cpe01g02349 626 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 248 - -
Cpe01g02349 626 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 247 623 - -
Cpe01g02349 626 MobiDBLite consensus disorder prediction 380 408 - -
Cpe01g02349 626 MobiDBLite consensus disorder prediction 314 336 - -
Cpe01g02349 626 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Cpe01g02349 626 ProSiteProfiles Protein kinase domain profile. 16 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g02349 626 Gene3D Transferase(Phosphotransferase) domain 1 97 317 - -
Cpe01g02349 626 Pfam Protein kinase domain 16 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g02349 626 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Cpe01g02349 626 MobiDBLite consensus disorder prediction 550 568 - -
Cpe01g02349 626 Coils Coil 582 616 - -
Cpe01g02349 626 CDD STKc_OSR1_SPAK 14 249 - -
Cpe01g02349 626 MobiDBLite consensus disorder prediction 307 336 - -
Cpe01g02349 626 MobiDBLite consensus disorder prediction 548 568 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02349 Cpe13g00900 CCT
Cpe01g02349 Cpe13g00900 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02349 Cpe-Chr1:19680058 Cpe08g00913 Cpe-Chr8:7182865 2.35E-07 dispersed
Cpe01g02349 Cpe-Chr1:19680058 Cpe13g00900 Cpe-Chr13:7689434 0 wgd
Cpe01g02349 Cpe-Chr1:19680058 Cpe03g00565 Cpe-Chr3:3360813 6.48E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62188 PF00069 Pkinase 1.10E-49 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02349 K08835 - pop:7487854 826.624