Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g02349 | ATGGAGATTCCTTCAGAAAAAAGATATCCAGTGAATGCCAAGGATTATAACTTGCATGAAGAAGTTGGTGAAGGCGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCACTAAAGGAGACTGTCGCTATAAAGGCTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACGATGACTTTGATTGATCATCCAAATTTGTTAAAAGCACATTGTTCCTTCACTGCTGGTCACCACCTCTGGGTTGTGATGCCATACATGTCTGGGGGATCTTGCCTTCATATTATGAAATCTGCTTTTTCTGAAGGTTTTGATGAGCCTGTCATAGCTACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATCTTGCTTGATTCTAATGGTACAGTAAAACTAGCTGATTTTGGAGTCTCGGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACATTTGTTGGAACTCCTTGCTGGATGGCACCGGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCATTTGGAATAACAGCGCTTGAACTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTAATGACATTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGATAGGAAATTTTCTAAGGCAAAGGAGGCTGATCTTCTGGTGCAGAACAAGGCTTTGTATGGAGACAAGGAGCATTTGTCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGATGATATGTCAAACATGGAAGATCTAGATGTACATACAACAACGCAAAGAAACAAGAAGAATGATTTTAGCTTTCCAGTAGAGGGTTCATCCCTTGGAAGTCCGAATCACCGAACTGCTGCCGCTAGTCAGGAGGATGGTTTCAGTGATCTTCATTATTTGGAGAGTTCCCTTGCTTCTTTCCCTACAAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATAAGCACGGACAGTGTAAGGCCAGTCGATAGGGAAAATGGAAGAATCGAGGGTGAGAGTTCAGGGCAAAGTGGTCCCCTACCACGTCATTACATGTCAGAGAATAAGAGGTCTTATAGTGGTTCATTAATTTCTGACAATGCTGTTTCTCCTAAAAAGATTGTTGTAGATGGTGATAGGGATTATGTGCAGTCAAAATTTCCATCTGAACGTAATTTCAGTGGTCCATTATTATATCGCCAAAAAAGAGATACAAATAACATATCATCTGTTGAGGATACATCAGATGGAACAGTAGTTCAATGCAAGGGGCGTTTTAAGGTTACTTCAGCGGAGCTTAGTCCGAAGGGTCCTATGACGGGTTCATTTAGCCCAATCTGTGGAGGGACAATGAGCCCAACATCCCTGAACCTTACGCCTTCTTTACTCCTCCCATCAATGCAATGCATTCTGCAGCAGAACATCCTGCAACGGGAAGAAATCGTTAAATTGATCAAGTATTTGGAACAATTGACTGGCAAGAATCCAGATGTACCAGAGACGGCCACTAATGACCCTCTGCAGGCTACCCCATCAAGTGATGGTTTCTTTGATGTCCAGACACCACCGGCTTCCTTGAGGGAAAGAGAGTTACAGTCTCAGGTCGTCCATCTGCAGCAGAGGATTGATAATCTCAACGAGGAATTAGAGAAGCAGAAGTTGAAAAATGCCGAGTTTGAAAGACACATGATTTCTATGGCAAATAAAGAGAGAACATAA | 1881 | 42.53 | MEIPSEKRYPVNAKDYNLHEEVGEGVSATVYKALCIPLKETVAIKALDLEKCNNDLDGIRREVQTMTLIDHPNLLKAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAFSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDRKFSKAKEADLLVQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNMEDLDVHTTTQRNKKNDFSFPVEGSSLGSPNHRTAAASQEDGFSDLHYLESSLASFPTKPLEALKDCFDIYEDISTDSVRPVDRENGRIEGESSGQSGPLPRHYMSENKRSYSGSLISDNAVSPKKIVVDGDRDYVQSKFPSERNFSGPLLYRQKRDTNNISSVEDTSDGTVVQCKGRFKVTSAELSPKGPMTGSFSPICGGTMSPTSLNLTPSLLLPSMQCILQQNILQREEIVKLIKYLEQLTGKNPDVPETATNDPLQATPSSDGFFDVQTPPASLRERELQSQVVHLQQRIDNLNEELEKQKLKNAEFERHMISMANKERT | 626 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 19680058 | 19691247 | - | Cp4.1LG01g23360.1 | Cpe01g02349 | 463662 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g02349 | 626 | SMART | serkin_6 | 16 | 293 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe01g02349 | 626 | PANTHER | SERINE/THREONINE-PROTEIN KINASE FRAY2 | 1 | 248 | - | - | |
Cpe01g02349 | 626 | PANTHER | SERINE/THREONINE-PROTEIN KINASE FRAY2 | 247 | 623 | - | - | |
Cpe01g02349 | 626 | SUPERFAMILY | Protein kinase-like (PK-like) | 6 | 237 | IPR011009 | - | |
Cpe01g02349 | 626 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 1 | 248 | - | - | |
Cpe01g02349 | 626 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 247 | 623 | - | - | |
Cpe01g02349 | 626 | MobiDBLite | consensus disorder prediction | 380 | 408 | - | - | |
Cpe01g02349 | 626 | MobiDBLite | consensus disorder prediction | 314 | 336 | - | - | |
Cpe01g02349 | 626 | ProSitePatterns | Protein kinases ATP-binding region signature. | 22 | 45 | IPR017441 | GO:0005524 | |
Cpe01g02349 | 626 | ProSiteProfiles | Protein kinase domain profile. | 16 | 281 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe01g02349 | 626 | Gene3D | Transferase(Phosphotransferase) domain 1 | 97 | 317 | - | - | |
Cpe01g02349 | 626 | Pfam | Protein kinase domain | 16 | 221 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe01g02349 | 626 | Gene3D | Phosphorylase Kinase; domain 1 | 5 | 92 | - | - | |
Cpe01g02349 | 626 | MobiDBLite | consensus disorder prediction | 550 | 568 | - | - | |
Cpe01g02349 | 626 | Coils | Coil | 582 | 616 | - | - | |
Cpe01g02349 | 626 | CDD | STKc_OSR1_SPAK | 14 | 249 | - | - | |
Cpe01g02349 | 626 | MobiDBLite | consensus disorder prediction | 307 | 336 | - | - | |
Cpe01g02349 | 626 | MobiDBLite | consensus disorder prediction | 548 | 568 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe01g02349 | Cpe13g00900 | CCT | |
Cpe01g02349 | Cpe13g00900 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g02349 | Cpe-Chr1:19680058 | Cpe08g00913 | Cpe-Chr8:7182865 | 2.35E-07 | dispersed | |
Cpe01g02349 | Cpe-Chr1:19680058 | Cpe13g00900 | Cpe-Chr13:7689434 | 0 | wgd | |
Cpe01g02349 | Cpe-Chr1:19680058 | Cpe03g00565 | Cpe-Chr3:3360813 | 6.48E-06 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62188 | PF00069 | Pkinase | 1.10E-49 | CL0016 | Cpe | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g02349 | K08835 | - | pop:7487854 | 826.624 |