Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02353 ATGAGACTCTCGTTTCACTCACTTCATGAACCAACTTGCTCCCTTTGCCACAAACACTGCAGATCCTTTGAATCTCTCAGAGAACATCTCATTGGTACGCCAAAGTTTCCATTTTTAAGTCAAACCATGGCCCGTTTTCGCAACATGGGAATTTATGACAAATTGACGAGCGACAACGGCCGCATGAGGCGCCATGAAGCAGTGGCATTAGCTTGCAGAATGGTGGGCGGTGGCAGCGATGGGTCGTTAGATATATGCGCAAGGGTCTGCCTGATTGACGAAAACGAAACCATCATTTTCTCTACTTATGTCAACCCAACGCTCCCCATCACAAACTATAGGTTGGAGTCCACGGGCGTTGGTCCAGAATACATGAGGGATCATGCAATGCCATTGAAGCAAGTTGGGAAGAAAATTGAAGACATCCTGTGCAATGGTGAGCCGATGTGGAAGATTCGACCTGGGGTGGGAGGGAAAGCAAGGATTCTTGTGGGTCATGGCTTGGGAGATCACCTCAAAAGCTTGCAAATTGAGTATCCACCATTCATGATAAGGGACACTGCCTACTATCCACCATTGATGAAAACAAGCAAGCTCACCAATTCTCTCCACTATCTAACACAAGCATATCTTGGGCAAGTTCCACATAACCCTACCTACCTCATAATTCATCCT 675 46.67 MRLSFHSLHEPTCSLCHKHCRSFESLREHLIGTPKFPFLSQTMARFRNMGIYDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDHAMPLKQVGKKIEDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIRDTAYYPPLMKTSKLTNSLHYLTQAYLGQVPHNPTYLIIHP 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19714336 19716111 + Cp4.1LG01g23270.1 Cpe01g02353 463666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02353 225 Gene3D - 62 219 IPR036397 GO:0003676
Cpe01g02353 225 PANTHER OS02G0709000 PROTEIN 1 33 - -
Cpe01g02353 225 PANTHER OS02G0709000 PROTEIN 42 212 - -
Cpe01g02353 225 SUPERFAMILY Ribonuclease H-like 80 212 IPR012337 -
Cpe01g02353 225 SMART exoiiiendus 66 219 IPR013520 -
Cpe01g02353 225 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 1 33 - -
Cpe01g02353 225 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 42 212 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02353 Cpe13g00906 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02353 Cpe-Chr1:19714336 Cpe06g00666 Cpe-Chr6:4144700 7.73E-12 dispersed
Cpe05g00008 Cpe-Chr5:36020 Cpe01g02353 Cpe-Chr1:19714336 4.58E-61 transposed
Cpe13g00906 Cpe-Chr13:7736009 Cpe01g02353 Cpe-Chr1:19714336 8.17E-48 transposed
Cpe01g02353 Cpe-Chr1:19714336 Cpe13g00905 Cpe-Chr13:7734991 1.01E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02353 - - qsu:111996861 294.664