Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02355 ATGATGACGGACGGTTTGATCTTCAACCGGTCTCCAGGTCACAGCAACATGCTGTTTTTCGGGAGTGGCGATTCCGTTCTTCGTGATAAAATGATAAAGGAAAATTCCCACAGGGGGATCGGGTACATGGCTAGTATAATTGGGTACAATATCAAGTTCATTTTGAGTTTACAGTTTGTTTCTGTTCTGTTTCTGGTGCATCTGCTGGAGATTAGTTTTGAATCAGAAAATAAACTGGAGCCAGAGCGCAAGACTGAGCTAGCAAACAAACTGGGTCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAAAATCGCCGAGCTCGATGGAAGACAAAGCAGCTTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCCTTTCGTTCGAGCTATGACTTTGTTGTCAAGGAGAATGAAAGGCTCAAAGCCGAGGTAGCTTCTTTATCTGAGAAACTTCTAGCTAAGGAAGTGGTTGAATCCTCGTTTCAAGCTAAGAAATCCGAGCCATTTTTGGAACAACAAATCCTTGTTCCCGTTGTGCAACATAGTATGAAGATTGAGGACCACCATAGTTGCAGGAGCAATGGAAGTGCCGTGCTGGACGAGGATGGTCCTCATCTCTTAGACAGTGGGGATTCGTACCTCCTGAGCAATGACTATAATGGCTGTGTTTTGCCCGTTTTTGGAATGAACTCGGAGGAGGAGGATGGAAGTGACGATGGTCAGGGTTACTTCTCAGCCGTTTATACAACAGACGATCAGCAGACGAATGAGGTAGAGCCTTTGACCTGGTGGGACTGGACGTCATAA 813 45.39 MMTDGLIFNRSPGHSNMLFFGSGDSVLRDKMIKENSHRGIGYMASIIGYNIKFILSLQFVSVLFLVHLLEISFESENKLEPERKTELANKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFRSSYDFVVKENERLKAEVASLSEKLLAKEVVESSFQAKKSEPFLEQQILVPVVQHSMKIEDHHSCRSNGSAVLDEDGPHLLDSGDSYLLSNDYNGCVLPVFGMNSEEEDGSDDGQGYFSAVYTTDDQQTNEVEPLTWWDWTS 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19722842 19725549 + Cp4.1LG01g23240.1 Cpe01g02355 463668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02355 270 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
Cpe01g02355 270 CDD homeodomain 66 113 IPR001356 GO:0003677
Cpe01g02355 270 ProSiteProfiles 'Homeobox' domain profile. 69 112 IPR001356 GO:0003677
Cpe01g02355 270 SMART HOX_1 58 116 IPR001356 GO:0003677
Cpe01g02355 270 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Cpe01g02355 270 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Cpe01g02355 270 Coils Coil 132 159 - -
Cpe01g02355 270 Pfam Homeodomain 68 110 IPR001356 GO:0003677
Cpe01g02355 270 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Cpe01g02355 270 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 65 251 - -
Cpe01g02355 270 Gene3D - 66 110 - -
Cpe01g02355 270 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 65 251 IPR045224 GO:0003700
Cpe01g02355 270 SUPERFAMILY Homeodomain-like 66 123 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02355 Cpe03g00557 CCT
Cpe01g02355 Cpe13g00908 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02355 Cpe-Chr1:19722842 Cpe20g00203 Cpe-Chr20:1171178 4.62E-39 dispersed
Cpe01g02355 Cpe-Chr1:19722842 Cpe13g00908 Cpe-Chr13:7748511 3.99E-148 wgd
Cpe01g02355 Cpe-Chr1:19722842 Cpe03g00557 Cpe-Chr3:3293854 3.38E-63 wgd
Cpe01g02355 Cpe-Chr1:19722842 Cpe04g00557 Cpe-Chr4:5986887 1.49E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48943 PF00046 Homeodomain 1.60E-14 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02355 K09338 - csv:101210106 397.127