Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02363 ATGGAGTTTCAGGAGGGTTTGATGAAGTTTATGGTCCATAGACATACTCAACCTATTTGGGCTTTCGAGAAAAATTCTCCATCGGTTGCAGTTTCAGAGATAACCAGTAGTCCTACACGGAAATGGCGGATCTTCAGTCGGTCGTCTTCTTCCCCATTTTCGTCCAAACCCCAATTGAAGGAAATACCGAAAGAATTGCTCTGTCCCATTTCGGGGTCTTTAATGGCGGACCCTGTAATTGTCTCCTCTGGCCACACATTCGAGGCCGCCTGTGTTCAAGTTTGTAAAGATTTAGGCTTCAAGCCGACTTTGTTAGATGGTTCGAAGCCGGATTTCACCTCTGTAATCCCGAATCTGGCTCTGAAATCTACCATTTTCAACTGGTGTAAAAACTCCTCCTCTGAACCCCCAAAGCCACTCGATTTCTCCTCCGCCGAAAAGCTCGTTGGTAAGTTCATGGCAGACCACAGGAAAAGCGATGAAGAATTGATTCAAGGGGTTGCAGAGAATCCTGTGGTTCGATTCAACCACACCGCCACCGATGTCACTCGTCGGGAATCTCATTTCTACTCGAGCTCCGATCAATCTGTCGCCGCCGTTCCGAGTCTGCCCCTTCCTCTCGCGACTCGACCGAGTTCTTCCTCTGAAAGTGAGATCTCTACTCTGAACTCCACTGAAGAAGAAGAGATCCTCGCGAAGCTCAAAAGCCCTCAGGTTACTGAGATTGAAGAGGGTGTGGTTACGCTGAGAAAAATCACGAGAATTCGAGAGGACACTAGGCTTTATCTCTGTTCCCCTTTGATTCTCTCTGCTCTTCGGTCTCTTATCGTCTCAAGGTACAGCAGCATTCAGGTGAATTCAGTTGCAGCACTTGTGAATCTGTCCTTAGAGAATATGAACAAGGTCAAGATCGTACGGTCGGGATTTCTCCCCAATTTGATCGATATTCTTAAAACGGGTTCCCCGGAGGTTCAAGAACATGCCGCCGGTGCCATTTTCAGCTTAGCTCTCGACGACGACAACAAGACGGCGATCGGCGTATTGGGTGCTCTGCCGTCATTGATACGGCTGTTGGTATCCCACTCGGAGCAGACCCGACACGACTCGGCTCTTGCTCTGTACCACTTATCGCAAGTTCAGAGCAACCGTTCGAAGCTAGTGAAACTTGGGTCGGTGCCGGTTTTTCTCGGGATGGTGAAATCCGGCCTCATGGTCGGCCGGATTTTTCTGATATTGTGTAATTTAGCAGCGTGTTTCGAGGGTCGTGCGGCGTTGTTGAACTCCGGCGCGGTGGAATGTTTAGTGGGTATGTTAAGAGAGAACGAGTTGGACTCCGAGTCGACACGGGAGAGTTGCGTGGCGGTTCTGTTAGAACTGAGTTACAGTAATTTGCGGTTCAAAGGTCTGGCCAAAACCGCCGGAGCAATGGAGGTTTTCATGGCGGTGGAGGAAAACGGAAGTGAAAGATTACAAGAGAAGGTGAAGAGGATCATGGAGTCCATGAAAATCAGAGAGGAAGAAGCTGAGAATGTGAATTGGGAGGAACTGCTAGACTCCGGTTCTTCCAGCAGCAGCCAAACTCGGTGTCGACTGGTCGACGGAATGGATAGGTCCTCCGCCAACTCGTCGGAGTTCTGA 1638 49.57 MEFQEGLMKFMVHRHTQPIWAFEKNSPSVAVSEITSSPTRKWRIFSRSSSSPFSSKPQLKEIPKELLCPISGSLMADPVIVSSGHTFEAACVQVCKDLGFKPTLLDGSKPDFTSVIPNLALKSTIFNWCKNSSSEPPKPLDFSSAEKLVGKFMADHRKSDEELIQGVAENPVVRFNHTATDVTRRESHFYSSSDQSVAAVPSLPLPLATRPSSSSESEISTLNSTEEEEILAKLKSPQVTEIEEGVVTLRKITRIREDTRLYLCSPLILSALRSLIVSRYSSIQVNSVAALVNLSLENMNKVKIVRSGFLPNLIDILKTGSPEVQEHAAGAIFSLALDDDNKTAIGVLGALPSLIRLLVSHSEQTRHDSALALYHLSQVQSNRSKLVKLGSVPVFLGMVKSGLMVGRIFLILCNLAACFEGRAALLNSGAVECLVGMLRENELDSESTRESCVAVLLELSYSNLRFKGLAKTAGAMEVFMAVEENGSERLQEKVKRIMESMKIREEEAENVNWEELLDSGSSSSSQTRCRLVDGMDRSSANSSEF 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19763882 19765519 - Cp4.1LG01g23190.1 Cpe01g02363 463676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02363 545 SMART Ubox_2 65 128 IPR003613 GO:0004842|GO:0016567
Cpe01g02363 545 Pfam Armadillo/beta-catenin-like repeat 299 336 IPR000225 GO:0005515
Cpe01g02363 545 MobiDBLite consensus disorder prediction 517 545 - -
Cpe01g02363 545 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 349 391 IPR000225 GO:0005515
Cpe01g02363 545 Gene3D - 219 403 IPR011989 -
Cpe01g02363 545 Gene3D - 406 501 IPR011989 -
Cpe01g02363 545 SMART arm_5 297 337 IPR000225 GO:0005515
Cpe01g02363 545 SMART arm_5 256 296 IPR000225 GO:0005515
Cpe01g02363 545 SMART arm_5 338 378 IPR000225 GO:0005515
Cpe01g02363 545 SMART arm_5 418 461 IPR000225 GO:0005515
Cpe01g02363 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 134 IPR013083 -
Cpe01g02363 545 CDD RING-Ubox 67 102 - -
Cpe01g02363 545 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 40 532 - -
Cpe01g02363 545 PANTHER U BOX DOMAIN-CONTAINING 40 532 - -
Cpe01g02363 545 SUPERFAMILY ARM repeat 228 508 IPR016024 -
Cpe01g02363 545 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 308 345 IPR000225 GO:0005515
Cpe01g02363 545 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842|GO:0016567
Cpe01g02363 545 Pfam U-box domain 62 132 IPR003613 GO:0004842|GO:0016567
Cpe01g02363 545 SUPERFAMILY RING/U-box 55 136 - -
Cpe01g02363 545 Coils Coil 487 507 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02363 Cpe13g00921 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02363 Cpe-Chr1:19763882 Cpe01g00910 Cpe-Chr1:5374541 6.84E-40 dispersed
Cpe01g02363 Cpe-Chr1:19763882 Cpe13g00921 Cpe-Chr13:7813731 0 wgd
Cpe01g02363 Cpe-Chr1:19763882 Cpe18g00826 Cpe-Chr18:7657630 5.79E-165 wgd
Cpe01g02363 Cpe-Chr1:19763882 Cpe20g00225 Cpe-Chr20:1295346 7.65E-150 wgd
Cpe01g02363 Cpe-Chr1:19763882 Cpe04g01536 Cpe-Chr4:12057760 2.91E-166 wgd
Cpe01g02363 Cpe-Chr1:19763882 Cpe09g01045 Cpe-Chr9:9139986 4.76E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02363 - - cmax:111489531 826.624