Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe01g02378 | ATGGGGGATAAGGATGAAGTTTTGGAGGCTGTTCTGAAAGAAGCTGTTGATTTGGAGAACGTGCCGGTTGAAGAGGTTTTTCAGACTTTGAGGTGTAATACTAATGGTTTGACAACAGAGGCGGCTCGTGAGAGATTGGCCATCTTTGGCTACAATAAGCTTGAAGAAAAGAAGGAGAGTAAGGTTTTGAAGTTCTTGGGATTTATGTGGAACCCTCTTTCATGGGTCATGGAAGCTGCAGCTATAATGGCTATTGCTCTAGCCAATGGAGGAGGAAAACCTCCAGATTGGCAAGATTTTGTTGGGATCATAACCTTGTTGCTTATCAATTCAACTATTAGTTTTATTGAGGAGAACAATGCTGGAAACGCCGCAGCTGCGCTCATGGCTCGTCTTGCACCGAAAGCTAAGTCTGCACTCACGGGAGAATCGCTACCTGTAACTAAAGGCCCAGGTGACAGCGTCTATTCAGGGTCGACGTGCAAACAGGGAGAAATTGAAGCAGTAGTTATTGCTACTGGTGTTCATACCTTCTTTGGCAAAGCTGCTCATCTTGTGGACTCCACAAACCAAGTGGGTCATTTCCAAAAGATTTATGCAGTATCAATTACGATCCGTATTGTGGTAAGTTTTAGAGCTTATTGTCAAGAAAAATGA | 657 | 43.68 | MGDKDEVLEAVLKEAVDLENVPVEEVFQTLRCNTNGLTTEAARERLAIFGYNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMARLAPKAKSALTGESLPVTKGPGDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKIYAVSITIRIVVSFRAYCQEK | 218 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 19893753 | 19897796 | + | Cp4.1LG01g23110.1 | Cpe01g02378 | 463691 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe01g02378 | 218 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 17 | 205 | IPR023298 | - | |
| Cpe01g02378 | 218 | Gene3D | - | 140 | 173 | - | - | |
| Cpe01g02378 | 218 | Pfam | E1-E2 ATPase | 137 | 199 | - | - | |
| Cpe01g02378 | 218 | SUPERFAMILY | Calcium ATPase, transduction domain A | 137 | 186 | IPR008250 | - | |
| Cpe01g02378 | 218 | PANTHER | PLASMA MEMBRANE ATPASE 1 | 3 | 137 | - | - | |
| Cpe01g02378 | 218 | PANTHER | PLASMA MEMBRANE ATPASE 1 | 137 | 198 | - | - | |
| Cpe01g02378 | 218 | SMART | Cation_ATPase_N_a_2 | 17 | 89 | IPR004014 | - | |
| Cpe01g02378 | 218 | Pfam | Cation transporter/ATPase, N-terminus | 20 | 83 | IPR004014 | - | |
| Cpe01g02378 | 218 | Gene3D | - | 68 | 139 | - | - | |
| Cpe01g02378 | 218 | Gene3D | - | 174 | 209 | - | - | |
| Cpe01g02378 | 218 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 3 | 137 | - | - | |
| Cpe01g02378 | 218 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 137 | 198 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g02378 | Cpe-Chr1:19893753 | Cpe18g00548 | Cpe-Chr18:6048594 | 2.67E-94 | dispersed | |
| Cpe01g02378 | Cpe-Chr1:19893753 | Cpe18g00807 | Cpe-Chr18:7531941 | 1.07E-99 | wgd | |
| Cpe01g02378 | Cpe-Chr1:19893753 | Cpe20g00206 | Cpe-Chr20:1186069 | 1.60E-97 | wgd | |
| Cpe01g02378 | Cpe-Chr1:19893753 | Cpe04g01518 | Cpe-Chr4:11954464 | 6.37E-95 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe01g02378 | K01535 | - | csv:101211115 | 324.324 |