Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02383 ATGGCTTCCCCTCATCATTCCCATAGCTTCATGTTTCAATCACGCCCCGCCGACCACCATGACTACGCCCCCACCGCTACTGCTTCCTTCAACAACATCCCCTTCTGCCCTCCTCACCTCTACTTCCACGATGGGGTTGTCCCGTTGATGATGAAGAGATCCATGTCGTTTTCCGAAAACGGCTGCGAGGAAGTTAACGGAGACGAGGGGTTGTCGGACGACGGGTCGGCATTGGGAGAGAAAAAGAAGCGGCTTAATTTAGAGCAAGTGAAGGCTTTGGAGAAAAGCTTTGAGCTGGGAAATAAGCTCGAGCCTGAGCGAAAATTGCAGCTGGCTAAAGCTCTTGGGCTGCAGCCGAGACAGATTGCTATTTGGTTCCAGAACAGAAGGGCCAGGTGGAAAACCAAGCAATTGGAGAGAGATTATGACGTGTTGAAGAAACAGTTTGAAGCTCTTAAAGCCGACAATGATGTCCTTCAAGCTCAAAATACCAAACTCCATGCACAGTTGTTAGCATTAAAAACTAAAGACTCCGGCGAGGTAGCGGCGGGCGGCAGCGCCACCGTGAACTTAAAGAAAGAAAACGAACGCTGTTGGAGTAGTGACAATAGTTGTGACATCAACCTGGAGATGTCAAGAACACAAGCATCAATAACAAGTAACGGTAGCAGCGGCGGAAGAGGATGTTCCCAACCTGGAATCAAGGACCTGTTCCCGTCGGCAGCGTTCCGGTCCGCCGCCATTACGCAGCTGCTGCAACACGGGTCGTCTAGATCAACGGTCGATCATTCGCCGGTGATTCAAGAAGAAAGCTTCACTCAAATGTTCAATGGAATGGAAGAACAGCAACAAACTACAGCCGCTGGGTTTTGGCCATGGGGTTCAGATCAAAATTCCCATTTTCATTAA 909 49.72 MASPHHSHSFMFQSRPADHHDYAPTATASFNNIPFCPPHLYFHDGVVPLMMKRSMSFSENGCEEVNGDEGLSDDGSALGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDVLKKQFEALKADNDVLQAQNTKLHAQLLALKTKDSGEVAAGGSATVNLKKENERCWSSDNSCDINLEMSRTQASITSNGSSGGRGCSQPGIKDLFPSAAFRSAAITQLLQHGSSRSTVDHSPVIQEESFTQMFNGMEEQQQTTAAGFWPWGSDQNSHFH 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19921644 19923236 - Cp4.1LG01g22890.1 Cpe01g02383 463696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02383 302 SMART HOX_1 79 140 IPR001356 GO:0003677
Cpe01g02383 302 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 302 IPR045224 GO:0003700
Cpe01g02383 302 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355|GO:0043565
Cpe01g02383 302 Coils Coil 128 169 - -
Cpe01g02383 302 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Cpe01g02383 302 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Cpe01g02383 302 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Cpe01g02383 302 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Cpe01g02383 302 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Cpe01g02383 302 CDD homeodomain 81 137 IPR001356 GO:0003677
Cpe01g02383 302 SUPERFAMILY Homeodomain-like 74 138 IPR009057 -
Cpe01g02383 302 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT7 1 302 - -
Cpe01g02383 302 Gene3D - 74 143 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02383 Cpe13g00941 CCT
Cpe01g02383 Cpe13g00941 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01454 Cpe-Chr1:8707125 Cpe01g02383 Cpe-Chr1:19921644 4.38E-78 dispersed
Cpe01g02383 Cpe-Chr1:19921644 Cpe19g00748 Cpe-Chr19:5769840 2.23E-38 dispersed
Cpe19g00447 Cpe-Chr19:3966973 Cpe01g02383 Cpe-Chr1:19921644 5.12E-28 dispersed
Cpe01g02383 Cpe-Chr1:19921644 Cpe13g00941 Cpe-Chr13:7932558 0 wgd
Cpe01g02383 Cpe-Chr1:19921644 Cpe20g00203 Cpe-Chr20:1171178 1.39E-36 wgd
Cpe01g02383 Cpe-Chr1:19921644 Cpe09g01065 Cpe-Chr9:9274308 6.06E-33 wgd
Cpe01g02383 Cpe-Chr1:19921644 Cpe09g00164 Cpe-Chr9:956347 1.15E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48945 PF00046 Homeodomain 4.70E-15 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02383 K09338 - csv:101212093 518.85