Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02387 ATGACCTCCGCCGAGGCTTCAATCAAGCCCAATTCTGCATCCGCTTTCAAGAACCATGCTGATTCTACCAAAGCCCCCTCTGATCCACCCAACGCGCTCTCTGCCAAGGATGCTGATATCGCCCTCTACACCGAGCTTTGGAATGCTTGTGCTGGTCCTCTTGTTTCTGTCCCTCGTGAAAACGAGCGTGTCTTCTACTTCCCTCAGGGCCACATTGAACAGGTGGAAGCATCAACTAATCAAGTGCCGGACCAACAGATGCCTGTTTATGACCTTCCATCCAAAATCCTCTGCCGCATTATTAATGTGTGCTTAAAGGCAGAGGCGGACACTGATGAGGTATTTGCACAAATAACTTTGCTTCCAGAGGCTAATCAAGATGAGGATTCTGTGGACAAGGAACCACCTCCTCCTCCTCCACGAAGATTTCATGTGCATTCTTTTTGCAAGACTCTGACTGCATCTGACACCAGTACTCATGGGGGGTTTTCAGTCTTGAGGCGCCATGCTGATGAATGTCTTCCTCCTCTGGACATGTCACAACAGCCTCCTACTCAGGAGTTAGTTGCAAAGGATTTGCTTGGAAATGAATGGCGTTTTCGTCATATATTTCGAGACGCTAATGGCTCCAAATTTATGTTCAGGACAAGCCCTTCTGAATTTGTTGTTCCATATGACCAGTATATGGAGTCTATTAAGAAGAGCTACACCATAGGGACGAGGTTCAAAATGAGATTTGAAGGTGAAGAAGCTCCTGAACAGAGATTCACGGGTACTGTCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGGTGGGATGAGACATCTACTATTTCTCGTCCGGAGAAAGTCTCTCCTTGGAAAATTGAGCCTGCTCTTGCTCCTCCAGCACTGAACCCCCTTCCGATGACTAGACCTAAAAGGCATCGATCAAACATGGTGCCTACATCCCCTGATTCCTCGGTTCTTACACGAGAGGGCCCATCAAGAATGATTATAGACCATTCACCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACTTTGAGAGGGAATTTAATTGATGGCAACGAGTCTGATACTGCTGAAAAATCTGTTATGTGGTCTCCATCACTAGATGATGAGAAGATTGATGTGGTTTCTACGTCTAAGAAACATGGAGCAGATAGTTGGATGCCTGCAGGAAGTGGTGAGCCAACCTACGCAGATCTTCTGTCAGGTTTTGGAGCTAATATTGATTCATCCTGTGGTGTCCGAGCTACCTTGGGAGATCCAGCAATAGTAACTGCTAATTCAATCAGAAAGCATGCAGTGTATCAAGATGGAAAGTTTAACTTCCTTGGTGGTGGTAGCTCATGGTCTGTCTTGCCTTCTGGTCTTTCACTTAACCTGGTCGACTCTAGTCAGAAGGCTCATATTCAGGCTGGTGACTTGCCTTATCAAATGAGAGGAAATGCCACCTTTAATGGCGTTGGTGATCATTCTATGGCTCAATGTTATAGAATTGATCATTCTATGGCCCATTGTTCTAGAATTGAACAGCCTAATGGAAACTGGTCGATGCCTCCACCTTCATCTCATTTTGATTATCCAGTTCATTCAACTGAACTGACTTCGAAACCTATGCTATTTCAGAACCAAGATATTTTGAATCTCAAAGATGGAAATTGTAAGCTTTTTGGCATCTCACTCGTAAAAAATCCTGCTATTTCAGACCCTGCAGAATTGCATAGAAATGTGATGAACGAGGCAGATGTTATACATGCTAATAGACATCCGATCCATTTGCATGAGTCTGAACTATCTAGGGGTTCAAATTTGGCTGATAAATCCCTTGCCATCAACGTGGCTGATAAGTTGCAGCACGCATGCACACCAAACTTGAAGGATTCTCAGAGCAAATCACAGGGTTCTTCAACAAGGAGCTGTACAAAGGTCCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAAGTTCAACAATTATGATGAATTGATTGCTGAATTGGACCAATTGTTTGAATTTGGTGGCGAGCTTCTGCCTCCCAAAAAGAGTTGGCTTGTTGTATATACGGATGATGAAGGCGATATGATGCTTGTTGGAGATGATCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTACAGAAGAGAAGAGGTCCAGAAGATGAATCCAAGATCCTTAACACTGAAAGGTGATGAGAATCCATCTGTTGAAGGGGAAGAAGCAAAAGAGATTAAAAGTCCGGCAGTACCTTCAATGTCAGCACCAGAGAGTTAG 2343 44.56 MTSAEASIKPNSASAFKNHADSTKAPSDPPNALSAKDADIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTNQVPDQQMPVYDLPSKILCRIINVCLKAEADTDEVFAQITLLPEANQDEDSVDKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPTQELVAKDLLGNEWRFRHIFRDANGSKFMFRTSPSEFVVPYDQYMESIKKSYTIGTRFKMRFEGEEAPEQRFTGTVIGCEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRHRSNMVPTSPDSSVLTREGPSRMIIDHSPASAFTRVLQGQEFSTLRGNLIDGNESDTAEKSVMWSPSLDDEKIDVVSTSKKHGADSWMPAGSGEPTYADLLSGFGANIDSSCGVRATLGDPAIVTANSIRKHAVYQDGKFNFLGGGSSWSVLPSGLSLNLVDSSQKAHIQAGDLPYQMRGNATFNGVGDHSMAQCYRIDHSMAHCSRIEQPNGNWSMPPPSSHFDYPVHSTELTSKPMLFQNQDILNLKDGNCKLFGISLVKNPAISDPAELHRNVMNEADVIHANRHPIHLHESELSRGSNLADKSLAINVADKLQHACTPNLKDSQSKSQGSSTRSCTKVHKQGIALGRSVDLSKFNNYDELIAELDQLFEFGGELLPPKKSWLVVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYRREEVQKMNPRSLTLKGDENPSVEGEEAKEIKSPAVPSMSAPES 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19949331 19956822 + Cp4.1LG01g22980.1 Cpe01g02387 463700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02387 780 CDD B3_DNA 146 223 IPR003340 GO:0003677
Cpe01g02387 780 PANTHER AUXIN RESPONSE FACTOR 2 215 763 - -
Cpe01g02387 780 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 205 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe01g02387 780 Pfam B3 DNA binding domain 148 222 IPR003340 GO:0003677
Cpe01g02387 780 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 215 763 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe01g02387 780 Pfam Auxin response factor 215 280 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe01g02387 780 Gene3D - 145 226 IPR015300 -
Cpe01g02387 780 MobiDBLite consensus disorder prediction 306 336 - -
Cpe01g02387 780 SMART B3_2 148 244 IPR003340 GO:0003677
Cpe01g02387 780 ProSiteProfiles PB1 domain profile. 656 740 IPR000270 GO:0005515
Cpe01g02387 780 MobiDBLite consensus disorder prediction 745 780 - -
Cpe01g02387 780 Gene3D - 652 745 - -
Cpe01g02387 780 PANTHER AUXIN RESPONSE FACTOR 2 28 205 - -
Cpe01g02387 780 MobiDBLite consensus disorder prediction 1 32 - -
Cpe01g02387 780 SUPERFAMILY CAD & PB1 domains 647 733 - -
Cpe01g02387 780 MobiDBLite consensus disorder prediction 321 335 - -
Cpe01g02387 780 SUPERFAMILY DNA-binding pseudobarrel domain 145 209 IPR015300 -
Cpe01g02387 780 Gene3D - 235 305 - -
Cpe01g02387 780 MobiDBLite consensus disorder prediction 1 29 - -
Cpe01g02387 780 Pfam AUX/IAA family 703 747 IPR033389 -
Cpe01g02387 780 Pfam AUX/IAA family 644 692 IPR033389 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02387 Cpe-Chr1:19949331 Cpe18g00939 Cpe-Chr18:8268551 0 dispersed
Cpe01g02387 Cpe-Chr1:19949331 Cpe16g00547 Cpe-Chr16:6316397 4.03E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48947 PF02362 B3 2.80E-08 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02387 - - bhj:120070853 936.791