Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g02387 | ATGACCTCCGCCGAGGCTTCAATCAAGCCCAATTCTGCATCCGCTTTCAAGAACCATGCTGATTCTACCAAAGCCCCCTCTGATCCACCCAACGCGCTCTCTGCCAAGGATGCTGATATCGCCCTCTACACCGAGCTTTGGAATGCTTGTGCTGGTCCTCTTGTTTCTGTCCCTCGTGAAAACGAGCGTGTCTTCTACTTCCCTCAGGGCCACATTGAACAGGTGGAAGCATCAACTAATCAAGTGCCGGACCAACAGATGCCTGTTTATGACCTTCCATCCAAAATCCTCTGCCGCATTATTAATGTGTGCTTAAAGGCAGAGGCGGACACTGATGAGGTATTTGCACAAATAACTTTGCTTCCAGAGGCTAATCAAGATGAGGATTCTGTGGACAAGGAACCACCTCCTCCTCCTCCACGAAGATTTCATGTGCATTCTTTTTGCAAGACTCTGACTGCATCTGACACCAGTACTCATGGGGGGTTTTCAGTCTTGAGGCGCCATGCTGATGAATGTCTTCCTCCTCTGGACATGTCACAACAGCCTCCTACTCAGGAGTTAGTTGCAAAGGATTTGCTTGGAAATGAATGGCGTTTTCGTCATATATTTCGAGACGCTAATGGCTCCAAATTTATGTTCAGGACAAGCCCTTCTGAATTTGTTGTTCCATATGACCAGTATATGGAGTCTATTAAGAAGAGCTACACCATAGGGACGAGGTTCAAAATGAGATTTGAAGGTGAAGAAGCTCCTGAACAGAGATTCACGGGTACTGTCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGGTGGGATGAGACATCTACTATTTCTCGTCCGGAGAAAGTCTCTCCTTGGAAAATTGAGCCTGCTCTTGCTCCTCCAGCACTGAACCCCCTTCCGATGACTAGACCTAAAAGGCATCGATCAAACATGGTGCCTACATCCCCTGATTCCTCGGTTCTTACACGAGAGGGCCCATCAAGAATGATTATAGACCATTCACCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACTTTGAGAGGGAATTTAATTGATGGCAACGAGTCTGATACTGCTGAAAAATCTGTTATGTGGTCTCCATCACTAGATGATGAGAAGATTGATGTGGTTTCTACGTCTAAGAAACATGGAGCAGATAGTTGGATGCCTGCAGGAAGTGGTGAGCCAACCTACGCAGATCTTCTGTCAGGTTTTGGAGCTAATATTGATTCATCCTGTGGTGTCCGAGCTACCTTGGGAGATCCAGCAATAGTAACTGCTAATTCAATCAGAAAGCATGCAGTGTATCAAGATGGAAAGTTTAACTTCCTTGGTGGTGGTAGCTCATGGTCTGTCTTGCCTTCTGGTCTTTCACTTAACCTGGTCGACTCTAGTCAGAAGGCTCATATTCAGGCTGGTGACTTGCCTTATCAAATGAGAGGAAATGCCACCTTTAATGGCGTTGGTGATCATTCTATGGCTCAATGTTATAGAATTGATCATTCTATGGCCCATTGTTCTAGAATTGAACAGCCTAATGGAAACTGGTCGATGCCTCCACCTTCATCTCATTTTGATTATCCAGTTCATTCAACTGAACTGACTTCGAAACCTATGCTATTTCAGAACCAAGATATTTTGAATCTCAAAGATGGAAATTGTAAGCTTTTTGGCATCTCACTCGTAAAAAATCCTGCTATTTCAGACCCTGCAGAATTGCATAGAAATGTGATGAACGAGGCAGATGTTATACATGCTAATAGACATCCGATCCATTTGCATGAGTCTGAACTATCTAGGGGTTCAAATTTGGCTGATAAATCCCTTGCCATCAACGTGGCTGATAAGTTGCAGCACGCATGCACACCAAACTTGAAGGATTCTCAGAGCAAATCACAGGGTTCTTCAACAAGGAGCTGTACAAAGGTCCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAAGTTCAACAATTATGATGAATTGATTGCTGAATTGGACCAATTGTTTGAATTTGGTGGCGAGCTTCTGCCTCCCAAAAAGAGTTGGCTTGTTGTATATACGGATGATGAAGGCGATATGATGCTTGTTGGAGATGATCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTACAGAAGAGAAGAGGTCCAGAAGATGAATCCAAGATCCTTAACACTGAAAGGTGATGAGAATCCATCTGTTGAAGGGGAAGAAGCAAAAGAGATTAAAAGTCCGGCAGTACCTTCAATGTCAGCACCAGAGAGTTAG | 2343 | 44.56 | MTSAEASIKPNSASAFKNHADSTKAPSDPPNALSAKDADIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTNQVPDQQMPVYDLPSKILCRIINVCLKAEADTDEVFAQITLLPEANQDEDSVDKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPTQELVAKDLLGNEWRFRHIFRDANGSKFMFRTSPSEFVVPYDQYMESIKKSYTIGTRFKMRFEGEEAPEQRFTGTVIGCEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRHRSNMVPTSPDSSVLTREGPSRMIIDHSPASAFTRVLQGQEFSTLRGNLIDGNESDTAEKSVMWSPSLDDEKIDVVSTSKKHGADSWMPAGSGEPTYADLLSGFGANIDSSCGVRATLGDPAIVTANSIRKHAVYQDGKFNFLGGGSSWSVLPSGLSLNLVDSSQKAHIQAGDLPYQMRGNATFNGVGDHSMAQCYRIDHSMAHCSRIEQPNGNWSMPPPSSHFDYPVHSTELTSKPMLFQNQDILNLKDGNCKLFGISLVKNPAISDPAELHRNVMNEADVIHANRHPIHLHESELSRGSNLADKSLAINVADKLQHACTPNLKDSQSKSQGSSTRSCTKVHKQGIALGRSVDLSKFNNYDELIAELDQLFEFGGELLPPKKSWLVVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYRREEVQKMNPRSLTLKGDENPSVEGEEAKEIKSPAVPSMSAPES | 780 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 19949331 | 19956822 | + | Cp4.1LG01g22980.1 | Cpe01g02387 | 463700 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g02387 | 780 | CDD | B3_DNA | 146 | 223 | IPR003340 | GO:0003677 | |
Cpe01g02387 | 780 | PANTHER | AUXIN RESPONSE FACTOR 2 | 215 | 763 | - | - | |
Cpe01g02387 | 780 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 28 | 205 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cpe01g02387 | 780 | Pfam | B3 DNA binding domain | 148 | 222 | IPR003340 | GO:0003677 | |
Cpe01g02387 | 780 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 215 | 763 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cpe01g02387 | 780 | Pfam | Auxin response factor | 215 | 280 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cpe01g02387 | 780 | Gene3D | - | 145 | 226 | IPR015300 | - | |
Cpe01g02387 | 780 | MobiDBLite | consensus disorder prediction | 306 | 336 | - | - | |
Cpe01g02387 | 780 | SMART | B3_2 | 148 | 244 | IPR003340 | GO:0003677 | |
Cpe01g02387 | 780 | ProSiteProfiles | PB1 domain profile. | 656 | 740 | IPR000270 | GO:0005515 | |
Cpe01g02387 | 780 | MobiDBLite | consensus disorder prediction | 745 | 780 | - | - | |
Cpe01g02387 | 780 | Gene3D | - | 652 | 745 | - | - | |
Cpe01g02387 | 780 | PANTHER | AUXIN RESPONSE FACTOR 2 | 28 | 205 | - | - | |
Cpe01g02387 | 780 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cpe01g02387 | 780 | SUPERFAMILY | CAD & PB1 domains | 647 | 733 | - | - | |
Cpe01g02387 | 780 | MobiDBLite | consensus disorder prediction | 321 | 335 | - | - | |
Cpe01g02387 | 780 | SUPERFAMILY | DNA-binding pseudobarrel domain | 145 | 209 | IPR015300 | - | |
Cpe01g02387 | 780 | Gene3D | - | 235 | 305 | - | - | |
Cpe01g02387 | 780 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Cpe01g02387 | 780 | Pfam | AUX/IAA family | 703 | 747 | IPR033389 | - | |
Cpe01g02387 | 780 | Pfam | AUX/IAA family | 644 | 692 | IPR033389 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g02387 | Cpe-Chr1:19949331 | Cpe18g00939 | Cpe-Chr18:8268551 | 0 | dispersed | |
Cpe01g02387 | Cpe-Chr1:19949331 | Cpe16g00547 | Cpe-Chr16:6316397 | 4.03E-24 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48947 | PF02362 | B3 | 2.80E-08 | CL0405 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g02387 | - | - | bhj:120070853 | 936.791 |