Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02394 ATGGATTTAGCCCCAGCAGCTCCCATCACTACTACTAATAACACTAAATCCCCCGACCCCGACACTGATAATACTCCCACAACCATTCCGCCGCCTTCCGCTAAATCGCCGCCCTTCACCAACGGCCTTCTCAAGCGCCACCACGCTCAACAACACCCTCCGCTTGTTACTTACAAAGAATGTCTCAAAAACCACGCCGCCACTTTAGGAGCTCATGCCTTAGACGGATGTGGGGAATTTATGCCCTCTCCTTCTTCCACTCCCACCGATCCCACTTCGCTTAAGTGCGCTGCGTGTGGCTGTCACCGGAATTTCCACCGCCGGGACCCTGAGGAACCAATCTCCACTTTGGCGATTAATTCCGCACCGACTCATGTGATTGAGTATCAGCCGCACCATCGCCACCACCCACCTCCTCCGCCGTTGGCTGGCAGTTGGAGTCCGAATTCTGCATCGCCGCCGCCGATCTCTTCGTCGTATTACCCTTCCGCGCCACATATGTTATTGGCGCTTTCAGCTGGGTTGTCCGGTCCTCCGCCGGAAAACGCACAGCGAAGCCCAAATGGACGGAAACGATTCAGAACAAAATTCAGCAACGAACAGAAGGAGAAAATGCTGGATTTAGCGGAACGAGTTGGATGGAAAATGCAGAAGAGAGACGAAGATTTGGTTCGAGATTTCTGCAATGAAATCGGAATTGAAAGAGGGGTTCTCAAAGTATGGATGCATAACAACAAGAACACCATGGGAAAAAAGACCGACACCAATGGCGCCACTACCACCACTCCCACCGCCACCGCCGCCGCCGCCGTCAACAACAACGAAAACAGAGCAGATGCGGGTTTGCATATGCATATTGGCTCAAATGGGTCATCTTCTTCCTCTTGA 888 52.59 MDLAPAAPITTTNNTKSPDPDTDNTPTTIPPPSAKSPPFTNGLLKRHHAQQHPPLVTYKECLKNHAATLGAHALDGCGEFMPSPSSTPTDPTSLKCAACGCHRNFHRRDPEEPISTLAINSAPTHVIEYQPHHRHHPPPPPLAGSWSPNSASPPPISSSYYPSAPHMLLALSAGLSGPPPENAQRSPNGRKRFRTKFSNEQKEKMLDLAERVGWKMQKRDEDLVRDFCNEIGIERGVLKVWMHNNKNTMGKKTDTNGATTTTPTATAAAAVNNNENRADAGLHMHIGSNGSSSSS 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19993956 19994843 - Cp4.1LG01g22920.1 Cpe01g02394 463707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02394 295 Gene3D - 178 251 - -
Cpe01g02394 295 MobiDBLite consensus disorder prediction 171 193 - -
Cpe01g02394 295 SUPERFAMILY Homeodomain-like 176 251 IPR009057 -
Cpe01g02394 295 MobiDBLite consensus disorder prediction 1 49 - -
Cpe01g02394 295 MobiDBLite consensus disorder prediction 7 23 - -
Cpe01g02394 295 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 9 267 - -
Cpe01g02394 295 Pfam ZF-HD protein dimerisation region 56 110 IPR006456 -
Cpe01g02394 295 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 109 IPR006456 -
Cpe01g02394 295 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 57 109 IPR006456 -
Cpe01g02394 295 MobiDBLite consensus disorder prediction 130 154 - -
Cpe01g02394 295 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 9 267 - -
Cpe01g02394 295 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 190 247 IPR006455 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02394 Cpe-Chr1:19993956 Cpe01g01712 Cpe-Chr1:11426926 1.65E-51 dispersed
Cpe01g02394 Cpe-Chr1:19993956 Cpe13g00949 Cpe-Chr13:7977814 5.27E-121 wgd
Cpe01g02394 Cpe-Chr1:19993956 Cpe03g00513 Cpe-Chr3:3026427 1.49E-95 wgd
Cpe01g02394 Cpe-Chr1:19993956 Cpe04g00062 Cpe-Chr4:611328 5.58E-85 wgd
Cpe01g02394 Cpe-Chr1:19993956 Cpe09g00178 Cpe-Chr9:1036932 5.95E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48950 PF04770 ZF-HD_dimer 1.30E-28 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02394 - - csv:101213548 372.474