Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02394 ATGGATTTAGCCCCAGCAGCTCCCATCACTACTACTAATAACACTAAATCCCCCGACCCCGACACTGATAATACTCCCACAACCATTCCGCCGCCTTCCGCTAAATCGCCGCCCTTCACCAACGGCCTTCTCAAGCGCCACCACGCTCAACAACACCCTCCGCTTGTTACTTACAAAGAATGTCTCAAAAACCACGCCGCCACTTTAGGAGCTCATGCCTTAGACGGATGTGGGGAATTTATGCCCTCTCCTTCTTCCACTCCCACCGATCCCACTTCGCTTAAGTGCGCTGCGTGTGGCTGTCACCGGAATTTCCACCGCCGGGACCCTGAGGAACCAATCTCCACTTTGGCGATTAATTCCGCACCGACTCATGTGATTGAGTATCAGCCGCACCATCGCCACCACCCACCTCCTCCGCCGTTGGCTGGCAGTTGGAGTCCGAATTCTGCATCGCCGCCGCCGATCTCTTCGTCGTATTACCCTTCCGCGCCACATATGTTATTGGCGCTTTCAGCTGGGTTGTCCGGTCCTCCGCCGGAAAACGCACAGCGAAGCCCAAATGGACGGAAACGATTCAGAACAAAATTCAGCAACGAACAGAAGGAGAAAATGCTGGATTTAGCGGAACGAGTTGGATGGAAAATGCAGAAGAGAGACGAAGATTTGGTTCGAGATTTCTGCAATGAAATCGGAATTGAAAGAGGGGTTCTCAAAGTATGGATGCATAACAACAAGAACACCATGGGAAAAAAGACCGACACCAATGGCGCCACTACCACCACTCCCACCGCCACCGCCGCCGCCGCCGTCAACAACAACGAAAACAGAGCAGATGCGGGTTTGCATATGCATATTGGCTCAAATGGGTCATCTTCTTCCTCTTGA 888 52.59 MDLAPAAPITTTNNTKSPDPDTDNTPTTIPPPSAKSPPFTNGLLKRHHAQQHPPLVTYKECLKNHAATLGAHALDGCGEFMPSPSSTPTDPTSLKCAACGCHRNFHRRDPEEPISTLAINSAPTHVIEYQPHHRHHPPPPPLAGSWSPNSASPPPISSSYYPSAPHMLLALSAGLSGPPPENAQRSPNGRKRFRTKFSNEQKEKMLDLAERVGWKMQKRDEDLVRDFCNEIGIERGVLKVWMHNNKNTMGKKTDTNGATTTTPTATAAAAVNNNENRADAGLHMHIGSNGSSSSS 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19993956 19994843 - Cp4.1LG01g22920.1 Cpe01g02394 463707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02394 295 Gene3D - 178 251 - -
Cpe01g02394 295 MobiDBLite consensus disorder prediction 171 193 - -
Cpe01g02394 295 SUPERFAMILY Homeodomain-like 176 251 IPR009057 -
Cpe01g02394 295 MobiDBLite consensus disorder prediction 1 49 - -
Cpe01g02394 295 MobiDBLite consensus disorder prediction 7 23 - -
Cpe01g02394 295 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 9 267 - -
Cpe01g02394 295 Pfam ZF-HD protein dimerisation region 56 110 IPR006456 -
Cpe01g02394 295 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 109 IPR006456 -
Cpe01g02394 295 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 57 109 IPR006456 -
Cpe01g02394 295 MobiDBLite consensus disorder prediction 130 154 - -
Cpe01g02394 295 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 9 267 - -
Cpe01g02394 295 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 190 247 IPR006455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02394 - - - csv:101213548 372.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02394 Cpe-Chr1:19993956 Cpe01g01712 Cpe-Chr1:11426926 1.65E-51 dispersed
Cpe01g02394 Cpe-Chr1:19993956 Cpe13g00949 Cpe-Chr13:7977814 5.27E-121 wgd
Cpe01g02394 Cpe-Chr1:19993956 Cpe03g00513 Cpe-Chr3:3026427 1.49E-95 wgd
Cpe01g02394 Cpe-Chr1:19993956 Cpe04g00062 Cpe-Chr4:611328 5.58E-85 wgd
Cpe01g02394 Cpe-Chr1:19993956 Cpe09g00178 Cpe-Chr9:1036932 5.95E-65 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe11g00465 . 50 233 ZF-HD Transcription Factor Family AT4G24660 55.6 2.7e-52 202.6
Cpe07g00420 . 99 309 ZF-HD Transcription Factor Family AT4G24660 50.7 2.4e-48 189.5
Cpe19g00746 . 48 244 ZF-HD Transcription Factor Family AT4G24660 51.8 3.1e-48 189.1
Cpe01g00763 . 59 223 ZF-HD Transcription Factor Family AT4G24660 54.7 9.0e-48 187.6
Cpe01g01712 . 82 281 ZF-HD Transcription Factor Family AT2G02540 54.4 4.0e-51 199.1
Cpe08g01331 . 70 264 ZF-HD Transcription Factor Family AT2G02540 51.2 4.1e-48 189.1
Cpe01g01712 . 79 284 ZF-HD Transcription Factor Family AT1G14440 55.2 3.2e-56 216.1
Cpe08g01331 . 67 264 ZF-HD Transcription Factor Family AT1G14440 54.3 2.5e-53 206.5
Cpe19g00812 CST 120 322 ZF-HD Transcription Factor Family AT2G18350 56.4 1.8e-52 203.4
Cpe03g00513 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.9 1.9e-49 193.4
Cpe13g00949 . 9 247 ZF-HD Transcription Factor Family AT5G15210 54.3 4.3e-49 192.2
Cpe04g00062 . 13 284 ZF-HD Transcription Factor Family AT5G15210 50.2 8.3e-45 177.9
Cpe03g00513 . 22 265 ZF-HD Transcription Factor Family AT3G28920 57.4 4.9e-57 218.8
Cpe01g02394 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.5 2.4e-56 216.5
Cpe13g00949 . 18 249 ZF-HD Transcription Factor Family AT3G28920 58.3 4.6e-55 212.2
Cpe04g00062 . 23 250 ZF-HD Transcription Factor Family AT3G28920 62.9 5.6e-53 205.3
Cpe01g02394 . 25 252 ZF-HD Transcription Factor Family AT5G39760 53.8 1.9e-51 200.3
Cpe03g00513 . 30 254 ZF-HD Transcription Factor Family AT5G39760 56.3 6.2e-50 195.3
Cpe13g00949 . 26 253 ZF-HD Transcription Factor Family AT5G39760 56.2 8.1e-50 194.9
Cpe04g00062 . 31 259 ZF-HD Transcription Factor Family AT5G39760 64.5 5.3e-49 192.2
Cpe01g02394 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.4 1.3e-49 193.7
Cpe09g00178 . 1 188 ZF-HD Transcription Factor Family AT1G69600 50.5 3.2e-48 189.1
Cpe13g00949 . 59 250 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-48 187.6
Cpe03g00513 . 58 250 ZF-HD Transcription Factor Family AT1G69600 50.5 9.7e-45 177.6
Cpe01g01712 . 82 281 ZF-HD Transcription Factor Family AT2G02540 54.4 4.0e-51 199.1
Cpe08g01331 . 70 264 ZF-HD Transcription Factor Family AT2G02540 51.2 4.1e-48 189.1
Cpe11g00465 . 50 233 ZF-HD Transcription Factor Family AT4G24660 55.6 2.7e-52 202.6
Cpe07g00420 . 99 309 ZF-HD Transcription Factor Family AT4G24660 50.7 2.4e-48 189.5
Cpe19g00746 . 48 244 ZF-HD Transcription Factor Family AT4G24660 51.8 3.1e-48 189.1
Cpe01g00763 . 59 223 ZF-HD Transcription Factor Family AT4G24660 54.7 9.0e-48 187.6
Cpe01g02394 . 25 252 ZF-HD Transcription Factor Family AT5G39760 53.8 1.9e-51 200.3
Cpe03g00513 . 30 254 ZF-HD Transcription Factor Family AT5G39760 56.3 6.2e-50 195.3
Cpe13g00949 . 26 253 ZF-HD Transcription Factor Family AT5G39760 56.2 8.1e-50 194.9
Cpe04g00062 . 31 259 ZF-HD Transcription Factor Family AT5G39760 64.5 5.3e-49 192.2
Cpe19g00812 CST 120 322 ZF-HD Transcription Factor Family AT2G18350 56.4 1.8e-52 203.4
Cpe01g02394 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.4 1.3e-49 193.7
Cpe09g00178 . 1 188 ZF-HD Transcription Factor Family AT1G69600 50.5 3.2e-48 189.1
Cpe13g00949 . 59 250 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-48 187.6
Cpe03g00513 . 58 250 ZF-HD Transcription Factor Family AT1G69600 50.5 9.7e-45 177.6
Cpe03g00513 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.9 1.9e-49 193.4
Cpe13g00949 . 9 247 ZF-HD Transcription Factor Family AT5G15210 54.3 4.3e-49 192.2
Cpe04g00062 . 13 284 ZF-HD Transcription Factor Family AT5G15210 50.2 8.3e-45 177.9
Cpe01g01712 . 79 284 ZF-HD Transcription Factor Family AT1G14440 55.2 3.2e-56 216.1
Cpe08g01331 . 67 264 ZF-HD Transcription Factor Family AT1G14440 54.3 2.5e-53 206.5
Cpe03g00513 . 22 265 ZF-HD Transcription Factor Family AT3G28920 57.4 4.9e-57 218.8
Cpe01g02394 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.5 2.4e-56 216.5
Cpe13g00949 . 18 249 ZF-HD Transcription Factor Family AT3G28920 58.3 4.6e-55 212.2
Cpe04g00062 . 23 250 ZF-HD Transcription Factor Family AT3G28920 62.9 5.6e-53 205.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48950 PF04770 ZF-HD_dimer 1.30E-28 No_clan Cpe TF