Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe01g02439 | ATGGGTGCTGTCTGCTGCTGTTTGAGCATGGACGATTTTGAAGACTATGTCAATCCTAATAGTTCGGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAATTTCTTAAACGCCTACACATTGATTTTTCGAAGAGGAGAAGTGCATCCTGTCTCTTCATCAATTCAAGGGGCGACATCCATGAGTTCTGCATCATCGACAGATAACTCTTTATCTGAAATATACCGCTCACCTCCAAGGCCATTGCCATATGATGCTGACCCCAGATACATCCGCTTGCAGCGGGATGGATTGATTTCTAGACGCGAGAAGGGCTCAAGCCATTTACATGAGGAGTCAGAACCTCTAAGAGGTGAAGTAGATACAGATTCAGATTCTTTGGGCTCGGCAGGCAAATGGAATGGATCTGCTTGTCTTGACGAATCTAAAGAAAATCTTGGCAAGTCATCTCTAAAGATCCCATCAACTAAATCTACCACTGGAGCAGGGTATGCTTATACATCTTCGGAAGACGAGGATGTCTGTCCAACATGTCTTGAAGAATATACCTCAGAGAATCCCAAGATAGTGACAAAATGCTGTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGCCCAGTTTGTGGCAAGTATGGATTGAGCGTAAGGACCATTCCGGATTTGCAGAACCATCGTGGTTCGTTTAGAAATTGA | 720 | 43.47 | MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGATSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRGEVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKYGLSVRTIPDLQNHRGSFRN | 239 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 20233827 | 20236163 | - | Cp4.1LG01g22390.1 | Cpe01g02439 | 463752 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe01g02439 | 239 | Pfam | Ring finger domain | 176 | 217 | IPR001841 | - | |
| Cpe01g02439 | 239 | MobiDBLite | consensus disorder prediction | 103 | 123 | - | - | |
| Cpe01g02439 | 239 | MobiDBLite | consensus disorder prediction | 56 | 89 | - | - | |
| Cpe01g02439 | 239 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 220 | - | - | |
| Cpe01g02439 | 239 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 221 | IPR013083 | - | |
| Cpe01g02439 | 239 | SMART | ring_2 | 177 | 217 | IPR001841 | - | |
| Cpe01g02439 | 239 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 220 | - | - | |
| Cpe01g02439 | 239 | MobiDBLite | consensus disorder prediction | 56 | 76 | - | - | |
| Cpe01g02439 | 239 | MobiDBLite | consensus disorder prediction | 103 | 129 | - | - | |
| Cpe01g02439 | 239 | SUPERFAMILY | RING/U-box | 172 | 221 | - | - | |
| Cpe01g02439 | 239 | ProSiteProfiles | Zinc finger RING-type profile. | 177 | 217 | IPR001841 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe01g02439 | Cpe13g00990 | CCT | |
| Cpe01g02439 | Cpe13g00990 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g02439 | Cpe-Chr1:20233827 | Cpe05g00349 | Cpe-Chr5:1953671 | 1.57E-26 | dispersed | |
| Cpe01g02439 | Cpe-Chr1:20233827 | Cpe13g00990 | Cpe-Chr13:8173990 | 9.93E-150 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe01g02439 | - | - | csv:101207736 | 411.764 |