Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02482 ATGGCGCCCTTACCAATCTCTCCTCTCTCTGTTTTGCTCCTAGTTCTCCTCCCTGCAATCTCCGCCGACTACGGCGGGTTGCAGTCAGGCCACGCTACGTTCTACGGCGGCGGTGACGGATCCGGGACAATGGGTGGGGCTTGTGGGTATGGGGATTTGTACAACCAAGGATACGGAACGAACACGGCGGCGCTGAGTACGGCTCTGTATAACGATGGGCTGAGCTGTGGTTCTTGCTATGAGATTACTTGCACTAGTGATCCCAATTGGTGTCTTCCTGGAAAGATCATTGTGACTGCCACTAATTTTTGCCCGCCCAACTACGCTCTGCCCAATGATGATGGCGGCTGGTGCAACCCTCCTCTGCAGCACTTTGATCTGTCTCAGCCTGCTTTTCTTCAGATTGCTCAGTTAGGTAGATCTCCGGCCGCCGTCCACAGTGGCTGA 447 54.81 MAPLPISPLSVLLLVLLPAISADYGGLQSGHATFYGGGDGSGTMGGACGYGDLYNQGYGTNTAALSTALYNDGLSCGSCYEITCTSDPNWCLPGKIIVTATNFCPPNYALPNDDGGWCNPPLQHFDLSQPAFLQIAQLGRSPAAVHSG 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20482482 20483503 + Cp4.1LG01g22140.1 Cpe01g02482 463795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02482 148 PANTHER EXPANSIN 10 138 - -
Cpe01g02482 148 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 148 IPR007112 -
Cpe01g02482 148 SMART dpbb_1 62 147 IPR007112 -
Cpe01g02482 148 PANTHER EXPANSIN-A15 10 138 IPR002963 GO:0009664
Cpe01g02482 148 Pfam Lytic transglycolase 62 140 IPR009009 -
Cpe01g02482 148 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Cpe01g02482 148 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Cpe01g02482 148 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cpe01g02482 148 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Cpe01g02482 148 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Cpe01g02482 148 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Cpe01g02482 148 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Cpe01g02482 148 Gene3D - 17 148 IPR036908 -
Cpe01g02482 148 SUPERFAMILY Barwin-like endoglucanases 13 139 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02482 Cpe-Chr1:20482482 Cpe01g01474 Cpe-Chr1:8805796 8.52E-66 dispersed
Cpe01g00990 Cpe-Chr1:5865470 Cpe01g02482 Cpe-Chr1:20482482 6.39E-71 wgd
Cpe01g02482 Cpe-Chr1:20482482 Cpe13g01039 Cpe-Chr13:8521044 2.69E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02482 - K20628 csv:101217496 224.557