Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g02505 | ATGAGAGGGTGCCATGATACTCGTTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTGAAAAGAAGATGCACGCCCACTTGCATATTTGCGCCTTATTTTAGGTCTGATGAGCCGAAGAAGTTCGCCAAGGTTCACAAAGTGTTTGGGGCGAGTAATGTGAGCAAGATTCTGACGGAGGTGCCTGAGGAGCAGAGAGAGGACACTGTGAACTCTTTGGCTTATGAGGCGGAGGCTAGGCTGAGAGATCCTGTTTATGGATGCATCGGTGCCATAGCTTTGTTGCAGACTAAAATGGCGGAGCTTCAACATGATCTTGCTCTTGCCAAAGCTCGCCTAGCTCGTTATGCTGCTGCTAATAATAATTATTCTTCTTCTACTTCTTTGGGTGTTTTGGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTGAGTTTCTCTGGGCAGAGTTCTGATGATATCTCCCAATATGGTTATTTATGTGACTTTACCCATTTTCCATATCCATTTCAAGCTTGA | 516 | 43.99 | MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMAELQHDLALAKARLARYAAANNNYSSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGYLCDFTHFPYPFQA | 171 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 20588619 | 20589134 | + | Cp4.1LG01g21850.1 | Cpe01g02505 | 463818 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g02505 | 171 | ProSiteProfiles | LOB domain profile. | 11 | 112 | IPR004883 | - | |
Cpe01g02505 | 171 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 149 | - | - | |
Cpe01g02505 | 171 | Pfam | Lateral organ boundaries (LOB) domain | 12 | 109 | IPR004883 | - | |
Cpe01g02505 | 171 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 21 | 1 | 149 | - | - | |
Cpe01g02505 | 171 | Coils | Coil | 91 | 118 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g02505 | Cpe-Chr1:20588619 | Cpe11g00664 | Cpe-Chr11:4450407 | 3.50E-49 | dispersed | |
Cpe01g02505 | Cpe-Chr1:20588619 | Cpe04g00534 | Cpe-Chr4:5794118 | 3.17E-50 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48955 | PF03195 | LOB | 1.80E-39 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g02505 | - | - | cpep:111808214 | 285.419 |