Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02505 ATGAGAGGGTGCCATGATACTCGTTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTGAAAAGAAGATGCACGCCCACTTGCATATTTGCGCCTTATTTTAGGTCTGATGAGCCGAAGAAGTTCGCCAAGGTTCACAAAGTGTTTGGGGCGAGTAATGTGAGCAAGATTCTGACGGAGGTGCCTGAGGAGCAGAGAGAGGACACTGTGAACTCTTTGGCTTATGAGGCGGAGGCTAGGCTGAGAGATCCTGTTTATGGATGCATCGGTGCCATAGCTTTGTTGCAGACTAAAATGGCGGAGCTTCAACATGATCTTGCTCTTGCCAAAGCTCGCCTAGCTCGTTATGCTGCTGCTAATAATAATTATTCTTCTTCTACTTCTTTGGGTGTTTTGGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTGAGTTTCTCTGGGCAGAGTTCTGATGATATCTCCCAATATGGTTATTTATGTGACTTTACCCATTTTCCATATCCATTTCAAGCTTGA 516 43.99 MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMAELQHDLALAKARLARYAAANNNYSSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGYLCDFTHFPYPFQA 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20588619 20589134 + Cp4.1LG01g21850.1 Cpe01g02505 463818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02505 171 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Cpe01g02505 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 149 - -
Cpe01g02505 171 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Cpe01g02505 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 149 - -
Cpe01g02505 171 Coils Coil 91 118 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02505 Cpe-Chr1:20588619 Cpe11g00664 Cpe-Chr11:4450407 3.50E-49 dispersed
Cpe01g02505 Cpe-Chr1:20588619 Cpe04g00534 Cpe-Chr4:5794118 3.17E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48955 PF03195 LOB 1.80E-39 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02505 - - cpep:111808214 285.419