Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02524 ATGGCGACGACTGAGAGCACGGTTTTGCAATTTTCACAGTCTTCTAACTCTTTGTCTGCCAAGGTTCATCCTCTGGTTATCTTCAACATTTGTGATTGCTATGTGAGGCGCCCGGACCAGGCGGATCGAGTGATCGGTACACTTCTTGGCTCTGTTTTACCTGATGGAACCGTTGATATTCGCAACTCTTATGCTGTTCCTCATAATGAATTCTCCGATCAGGTTGCGCTGGATATTGATTATCATCACAATATGTTAAGTTCCCACCAAAAAGTTAATCCAAAGGAAGTTATCGTTGGATGGTACTCAACTGGTATGGGAGTTACGGGTGGCAGTGCATTGATACACGAATTTTATTCTAGAGAAGTTTCAAACCCTATTCACCTGACTGTTGATACTGGATTTAAAAATGGAGAAGGCACAATAAAAGCCTACATCTCTGTCAATTTGTCTCTGGGCGATAGACAACTTGCTGCTCAGTTTCAAGAAATTCCTTTAGATCTTCGAATGGTTGAAGCTGAGAGACTTGGATTTGATATACTGAAGACAACTTCTATTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGATTGCTTGCCTTAATTGATGATATTTACAAATATGTTGATAATGTTGTGGAAGGACATGTTGAGCCAGACAACACGATTGGGAGATTTCTTGCTGAGACTGTAGCCTCTCTTCCAAAACTGTCGCCATCTGCTTTTGATAAACTGATGAATGACAACGTGCAGGACCATTTGCTGTTGCTGTATTTGTCAAGTATCACCAGGACACAACTGAGCTTGGCTGAAAAGTTGAACACGGCTGCTCAGATTCTGTAA 858 41.49 MATTESTVLQFSQSSNSLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLSSHQKVNPKEVIVGWYSTGMGVTGGSALIHEFYSREVSNPIHLTVDTGFKNGEGTIKAYISVNLSLGDRQLAAQFQEIPLDLRMVEAERLGFDILKTTSIDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEPDNTIGRFLAETVASLPKLSPSAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20708263 20713781 + Cp4.1LG01g25230.1 Cpe01g02524 463837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02524 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cpe01g02524 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cpe01g02524 285 Gene3D Cytidine Deaminase, domain 2 7 186 - -
Cpe01g02524 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 121 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cpe01g02524 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 13 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cpe01g02524 285 Pfam Maintenance of mitochondrial structure and function 172 278 IPR024969 -
Cpe01g02524 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 13 284 - -
Cpe01g02524 285 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cpe01g02524 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02524 Cpe13g01072 CCT
Cpe01g02524 Cpe13g01072 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02524 Cpe-Chr1:20708263 Cpe19g00275 Cpe-Chr19:2285836 7.01E-29 dispersed
Cpe01g02524 Cpe-Chr1:20708263 Cpe13g01072 Cpe-Chr13:8693610 0 wgd
Cpe01g02524 Cpe-Chr1:20708263 Cpe03g00064 Cpe-Chr3:355220 7.75E-27 wgd
Cpe01g02524 Cpe-Chr1:20708263 Cpe08g01213 Cpe-Chr8:8869884 7.11E-33 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02524 K03249 - csv:101205957 549.28