Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g02534 | ATGGTTTTCGCCTCACACACCCATTTCATGAGGATTCACTGTCTGAATCTTCCGATGTCCACAATCCAAAACACCCACGTTGTGGCAATGGAAGAAGAGCAAGAAGAGCGGCCTTCCCGGGTTTCTACAGCTGGGACTGCCGCTTCACCGGCGTCTGATGATGTGCGGCGGTGCTCGGTCCAGTCGAGTGCTGAGATTGTGGGGGCGGCGGCGGTGGTGGAGAAAAGAAGGGGATCCTCTGTGTCGGAGTGCTCTGTTGAGATGGATCTGGAATGTGGGTTAGGTGAGATTAAGGTACATTTGGCGAAAATGGAGAGAGATTGCCGTATTTGTCATCTGAGCTTGGATGCTACGAATCATGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGCAAGGATGATTTGGCTGCTGCTCATAAGCACTGTGCTGAGGCTTGGTTCAAGGTTAAGGGTGACATCACCTGTGAAATCTGTGGATCAATTGCACACAATGTTACTAGTACTTGTGAAGCTGATTCGACCGAGCAGTGCAACGAGTCGAACGATGGAACGACAGCAACCACTGCAGCTGCTGTCATGGTGCCACCACACCCTATGGAGGCTCGAAACTTCTGGCAGGGCCACAGGTTCCTGAATTTCTTGCTTGCTTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCATAA | 708 | 50.28 | MVFASHTHFMRIHCLNLPMSTIQNTHVVAMEEEQEERPSRVSTAGTAASPASDDVRRCSVQSSAEIVGAAAVVEKRRGSSVSECSVEMDLECGLGEIKVHLAKMERDCRICHLSLDATNHESGIPIELGCSCKDDLAAAHKHCAEAWFKVKGDITCEICGSIAHNVTSTCEADSTEQCNESNDGTTATTAAAVMVPPHPMEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 20756211 | 20758905 | + | Cp4.1LG01g25210.1 | Cpe01g02534 | 463847 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g02534 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 162 | IPR013083 | - | |
Cpe01g02534 | 235 | SUPERFAMILY | RING/U-box | 105 | 162 | - | - | |
Cpe01g02534 | 235 | PANTHER | ZINC FINGER, RING-CH-TYPE | 21 | 235 | - | - | |
Cpe01g02534 | 235 | MobiDBLite | consensus disorder prediction | 29 | 54 | - | - | |
Cpe01g02534 | 235 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 21 | 235 | - | - | |
Cpe01g02534 | 235 | Pfam | RING-variant domain | 108 | 159 | IPR011016 | GO:0008270 | |
Cpe01g02534 | 235 | SMART | ringv_2 | 107 | 160 | IPR011016 | GO:0008270 | |
Cpe01g02534 | 235 | MobiDBLite | consensus disorder prediction | 40 | 54 | - | - | |
Cpe01g02534 | 235 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 100 | 166 | IPR011016 | GO:0008270 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe01g02534 | Cpe13g01080 | CCT | |
Cpe01g02534 | Cpe13g01080 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g02534 | Cpe-Chr1:20756211 | Cpe19g01076 | Cpe-Chr19:7343744 | 1.51E-29 | dispersed | |
Cpe01g02534 | Cpe-Chr1:20756211 | Cpe13g01080 | Cpe-Chr13:8732164 | 1.69E-87 | wgd | |
Cpe01g02534 | Cpe-Chr1:20756211 | Cpe19g00305 | Cpe-Chr19:2654666 | 2.84E-57 | wgd | |
Cpe01g02534 | Cpe-Chr1:20756211 | Cpe20g00846 | Cpe-Chr20:7608385 | 6.57E-47 | wgd | |
Cpe01g02534 | Cpe-Chr1:20756211 | Cpe03g00081 | Cpe-Chr3:432033 | 1.03E-71 | wgd | |
Cpe01g02534 | Cpe-Chr1:20756211 | Cpe08g01193 | Cpe-Chr8:8780053 | 5.07E-75 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g02534 | - | - | cpep:111788319 | 474.552 |