Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02534 ATGGTTTTCGCCTCACACACCCATTTCATGAGGATTCACTGTCTGAATCTTCCGATGTCCACAATCCAAAACACCCACGTTGTGGCAATGGAAGAAGAGCAAGAAGAGCGGCCTTCCCGGGTTTCTACAGCTGGGACTGCCGCTTCACCGGCGTCTGATGATGTGCGGCGGTGCTCGGTCCAGTCGAGTGCTGAGATTGTGGGGGCGGCGGCGGTGGTGGAGAAAAGAAGGGGATCCTCTGTGTCGGAGTGCTCTGTTGAGATGGATCTGGAATGTGGGTTAGGTGAGATTAAGGTACATTTGGCGAAAATGGAGAGAGATTGCCGTATTTGTCATCTGAGCTTGGATGCTACGAATCATGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGCAAGGATGATTTGGCTGCTGCTCATAAGCACTGTGCTGAGGCTTGGTTCAAGGTTAAGGGTGACATCACCTGTGAAATCTGTGGATCAATTGCACACAATGTTACTAGTACTTGTGAAGCTGATTCGACCGAGCAGTGCAACGAGTCGAACGATGGAACGACAGCAACCACTGCAGCTGCTGTCATGGTGCCACCACACCCTATGGAGGCTCGAAACTTCTGGCAGGGCCACAGGTTCCTGAATTTCTTGCTTGCTTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCATAA 708 50.28 MVFASHTHFMRIHCLNLPMSTIQNTHVVAMEEEQEERPSRVSTAGTAASPASDDVRRCSVQSSAEIVGAAAVVEKRRGSSVSECSVEMDLECGLGEIKVHLAKMERDCRICHLSLDATNHESGIPIELGCSCKDDLAAAHKHCAEAWFKVKGDITCEICGSIAHNVTSTCEADSTEQCNESNDGTTATTAAAVMVPPHPMEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20756211 20758905 + Cp4.1LG01g25210.1 Cpe01g02534 463847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02534 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 162 IPR013083 -
Cpe01g02534 235 SUPERFAMILY RING/U-box 105 162 - -
Cpe01g02534 235 PANTHER ZINC FINGER, RING-CH-TYPE 21 235 - -
Cpe01g02534 235 MobiDBLite consensus disorder prediction 29 54 - -
Cpe01g02534 235 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 21 235 - -
Cpe01g02534 235 Pfam RING-variant domain 108 159 IPR011016 GO:0008270
Cpe01g02534 235 SMART ringv_2 107 160 IPR011016 GO:0008270
Cpe01g02534 235 MobiDBLite consensus disorder prediction 40 54 - -
Cpe01g02534 235 ProSiteProfiles Zinc finger RING-CH-type profile. 100 166 IPR011016 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02534 Cpe13g01080 CCT
Cpe01g02534 Cpe13g01080 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02534 Cpe-Chr1:20756211 Cpe19g01076 Cpe-Chr19:7343744 1.51E-29 dispersed
Cpe01g02534 Cpe-Chr1:20756211 Cpe13g01080 Cpe-Chr13:8732164 1.69E-87 wgd
Cpe01g02534 Cpe-Chr1:20756211 Cpe19g00305 Cpe-Chr19:2654666 2.84E-57 wgd
Cpe01g02534 Cpe-Chr1:20756211 Cpe20g00846 Cpe-Chr20:7608385 6.57E-47 wgd
Cpe01g02534 Cpe-Chr1:20756211 Cpe03g00081 Cpe-Chr3:432033 1.03E-71 wgd
Cpe01g02534 Cpe-Chr1:20756211 Cpe08g01193 Cpe-Chr8:8780053 5.07E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02534 - - cpep:111788319 474.552