Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02551 ATGGCGAGTAGATGGTGGAGTGGAATTGGAATTGAAGATCAGCATGGAGCTAAAATCCACAGGCGCCGTCGAGGTCGCCCACCGGGCTCAAGAAACAAGCCAAGCCCACCCATTCTCATAACCAACCACGCTCCCAACGCCTTCCAAACCCACGTATTCCAAATCACCCCAGCCACCGACATAGCACATTCCATTTCCACCTTCGCTCACCGCCGCCACTGCGGACTCTCCATTCTCAGCGGCTCCGGCCTCGTCGCCAACGTCACTCTCCGCCAACCCGCTGCCCCTGGCGGCGTCATCACTCACCATGAACGCTTCGAGATCTTGTCACTCTCTGGCGCTTTCCTTCCCGCACCGTCCCCCCAGTGGGCTACTAGCTTGACCGTCTGTCTAGCCGGTGGCCATGGACGGGTCGTCGGCGGCCTGGTTTCCGGTCCCCTCATCGCCGACGGCCCTGTGATAGTAATTGCAGCTTCGTTTACGAACGCTATATATGAAAGATTACAGATTGACGAAGAGGAAGAGAATGGAAACAAGGAAATGGAAATGGAAGATCATAGTAATGGAAAAAATTCAATGGGAGAATCATCAGGAGGAGCTTCTTTGGCAGTTCATAATTTGATTTCAAATACCCAAATTTCTCAAGATGTGTTTTGGGCTCAACTTCCTCCATCGTATTAA 681 52.57 MASRWWSGIGIEDQHGAKIHRRRRGRPPGSRNKPSPPILITNHAPNAFQTHVFQITPATDIAHSISTFAHRRHCGLSILSGSGLVANVTLRQPAAPGGVITHHERFEILSLSGAFLPAPSPQWATSLTVCLAGGHGRVVGGLVSGPLIADGPVIVIAASFTNAIYERLQIDEEEENGNKEMEMEDHSNGKNSMGESSGGASLAVHNLISNTQISQDVFWAQLPPSY 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20834550 20835230 + Cp4.1LG01g25540.1 Cpe01g02551 463864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02551 226 MobiDBLite consensus disorder prediction 172 189 - -
Cpe01g02551 226 MobiDBLite consensus disorder prediction 16 37 - -
Cpe01g02551 226 CDD DUF296 49 160 IPR005175 -
Cpe01g02551 226 MobiDBLite consensus disorder prediction 172 198 - -
Cpe01g02551 226 Gene3D - 49 188 - -
Cpe01g02551 226 Pfam Plants and Prokaryotes Conserved (PCC) domain 50 162 IPR005175 -
Cpe01g02551 226 SUPERFAMILY AF0104/ALDC/Ptd012-like 45 173 - -
Cpe01g02551 226 PIRSF ESCAROLA 9 218 IPR014476 GO:0003680
Cpe01g02551 226 ProSiteProfiles PPC domain profile profile. 45 184 IPR005175 -
Cpe01g02551 226 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 197 IPR014476 GO:0003680
Cpe01g02551 226 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 197 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00169 Cpe01g02551 CCT
Cpe01g02551 Cpe13g01102 CCT
Cpe01g01079 Cpe01g02551 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02551 Cpe-Chr1:20834550 Cpe03g01656 Cpe-Chr3:12655423 1.14E-53 dispersed
Cpe01g01079 Cpe-Chr1:6366461 Cpe01g02551 Cpe-Chr1:20834550 1.40E-66 wgd
Cpe01g00169 Cpe-Chr1:954469 Cpe01g02551 Cpe-Chr1:20834550 1.03E-65 wgd
Cpe01g02551 Cpe-Chr1:20834550 Cpe13g01102 Cpe-Chr13:8883391 3.24E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02551 - - cmos:111457545 404.445