Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02608 ATGGATGTTTCGGCCATAGAAATCAACCTCGGGACTGCAGATTCATGGCGGGCAGACAGAAATGGCAACGTCGGCGGAAAATGCACGTTAGATCGACGGAAAGAGAGGCGTAGGGCGGCATCGTTTCCACACCGGAGTATGAGCTCTTCATCCACTCAACTCTATGCTTCAAATATGGGTATCTATGAGCCATTTTACCAGATCAACTCATGGGGAAACGCCTACAGTCGTCCACTTTTATCGCCTATTATAAAAGTGGACGACTGTGTAGACAATAAACCCGAGTTAATTCCTTTTGAATCGATGGATCATCCTGAGAGCAGTCAAGAAATGAACAAACCAATTGATGATAAGGTTCAAAGACGTTTAGCACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTGGAAACTAGCCGTTTGAAGCTGGCTCAATTGGAGCAAGAGCTAGAAAGAACCAAGCTGAAGGGTGTACATACAAGCTGTGTGGTAGATACCAGCCACTTGGGATTCGGCGGATTGGTAAACCCAGGGATTGCTGCATTTGAGATGGAGTATAATCACTGGGTTGAGGAGCAACAGAGGCAGGTCACTGAACTGAGAAAAGCGTTGCAAGTTCATGTAACCGATATGGAACTCCAAATTTTGGTGGAGAGCAGCTTAAACCATTACCACAACTTGTTTTGCATGAAGGCAAATGTTGCAAAGGCTGATGTATTCTATTTAATGTCTGGAGTATGGAGATCATCAGCAGAGCGTTTTTTCCTCTGGATTGGGGGATTTCGCCCATCCGAGCTGCTCAACGTTCTGAAGCCATACTTCGGGCCGTTAAACGAACAACAAAGAGCCGATATCCACAAGTTGCATCAGTCGTCTCGGCAAGCTGAAGACGCGCTCACACAGGGAATGGAAAAATTACACCAGAATCTATCCCTCAGCATTGCCAATGATCCTCTTGGAAGCTATATTTCTCAGATGGGTGATGGGATGGAGAGGCTAGAAGCATTGGAGAACTTTGTAAGCCAGGCAACAAACTTTGAAGAGAGTGTCTCACATCCTAACCACCAAACAAGCAGCACAAGGCTTGCTCGCTTTAGGCGAGTACTTCCATCGTCTCCGTGTTCTCAGTTCCCTCTGGACCACCCGACCTCGCAAACCCGCCGAGCCATGAAAGGTTCAGACATGAGAACGATCGAGATCGTGATCCTCATCAAATTGAACACTCTGAAGATGCAGAGATCGTATCAAGCGGTGGTTATTGTCCTCGTTTCAATCTTAGCACTGCCATCCTCTTCCTTTTCGAGCTCGGAGTTGCCGCTCACGGCGGATGGAACGGTGTTGGAGCTCGACGAATCCAATTTCGATCTCGCCATTTCTTCATTTGATTACATATTGGTCGACTTTTACGCCCCTTGGTGCGGCCACTGCAAGCGTCTTTCTCCAGAGTTGGACGCTGCTGCACCTCAGCTTGCCAAATTGAAGGAGCCTATAGTTCTTGCAAAACTGAATGCTGACAAGTTTACTCGTCTTGCTAAAAAATATGACGTTGATGCCTATCCTACAATCAAGATCTTCATGCATGGCGTTCCAGTAGACTATTATGGACCAAGGAAAGCAGAGTTACTTGTCCGTTATTTGAAGAAATTTGTTGCCCCAGATGTCTCAATTCTCGAGTCAGACTCATCGATTAATGAATTTGTTGAAGCTTCTGGGCCTTACTTCCCTATTTATTTGGGTTTCGGTTTAGATGAATCTATTATTTCTAAATTTGCTATCAAGTACAAGAAGAAAGCTTGGTTTTCAGTGGCCAAGGGATTCTCGGAGGATATCATGGTATCTTATGATTTTGATAAAGTTCCTGCCTTGGTTTCTATCCATCCAAATTACAACAATGAACGGAGCATTTTTTATGGTCCCTTTGAAGATAAATTCTTGGAGGAGTTCATAAAACAAAGCTTGTTCCCTCTTGTTCTGCCCATAAACTACGACACACTTAAGCTACTAAAGGACGATGAGAGGAAAATAGCACTCACAATAGTGAAGGATGAGGATGATGACCAGACAAAGAATTTGATCAATTTATTAAAGGCTGCTGCATCTGCTAATCGTGACTTGGTGTTTGCTTATGTCGGGGCTAAACAGTGGGGAGAATTTGCTGATTCATTTGGGGACAAGAAGACCACATTACCAAAAATGATCATTTGGGATGGGAAGGAGGAATACTTAATGGTTATTGGTTCAGAAAGCATCATTGGGAACGACCATGCATCGGAAATCTCTCAATTTGTTGAAGGATATAGGGAAGGGAGAACTGAAGAAAGAAGAGTTGCAGGTCCTTCGTTTATTGGCTTCATAAATTCAATGATAGGCACCTGGAGTGTATACATCATTGTATTTATAGTTGCAATAGTAATGCTTTTCCAATACCTCACAAAAGATGATAACGAATATCATAGAGTCGATACTCCTGCTCGGGATCAGGTTGACCAAATTAGTGGCAGCTCTACCTCACAGGTTGAAAGGACTGAGTACAGGGCTGGTGACAAGGAAGATTGA 2580 44.03 MDVSAIEINLGTADSWRADRNGNVGGKCTLDRRKERRRAASFPHRSMSSSSTQLYASNMGIYEPFYQINSWGNAYSRPLLSPIIKVDDCVDNKPELIPFESMDHPESSQEMNKPIDDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTKLKGVHTSCVVDTSHLGFGGLVNPGIAAFEMEYNHWVEEQQRQVTELRKALQVHVTDMELQILVESSLNHYHNLFCMKANVAKADVFYLMSGVWRSSAERFFLWIGGFRPSELLNVLKPYFGPLNEQQRADIHKLHQSSRQAEDALTQGMEKLHQNLSLSIANDPLGSYISQMGDGMERLEALENFVSQATNFEESVSHPNHQTSSTRLARFRRVLPSSPCSQFPLDHPTSQTRRAMKGSDMRTIEIVILIKLNTLKMQRSYQAVVIVLVSILALPSSSFSSSELPLTADGTVLELDESNFDLAISSFDYILVDFYAPWCGHCKRLSPELDAAAPQLAKLKEPIVLAKLNADKFTRLAKKYDVDAYPTIKIFMHGVPVDYYGPRKAELLVRYLKKFVAPDVSILESDSSINEFVEASGPYFPIYLGFGLDESIISKFAIKYKKKAWFSVAKGFSEDIMVSYDFDKVPALVSIHPNYNNERSIFYGPFEDKFLEEFIKQSLFPLVLPINYDTLKLLKDDERKIALTIVKDEDDDQTKNLINLLKAAASANRDLVFAYVGAKQWGEFADSFGDKKTTLPKMIIWDGKEEYLMVIGSESIIGNDHASEISQFVEGYREGRTEERRVAGPSFIGFINSMIGTWSVYIIVFIVAIVMLFQYLTKDDNEYHRVDTPARDQVDQISGSSTSQVERTEYRAGDKED 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21130185 21138174 + Cp4.1LG01g26070.1 Cpe01g02608 463921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02608 859 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 116 160 IPR004827 GO:0003700|GO:0006355
Cpe01g02608 859 SUPERFAMILY Leucine zipper domain 118 155 IPR046347 GO:0003700|GO:0006355
Cpe01g02608 859 Coils Coil 137 164 - -
Cpe01g02608 859 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 121 136 IPR004827 GO:0003700|GO:0006355
Cpe01g02608 859 PRINTS Thioredoxin family signature 480 489 - -
Cpe01g02608 859 PRINTS Thioredoxin family signature 472 480 - -
Cpe01g02608 859 PRINTS Thioredoxin family signature 523 534 - -
Cpe01g02608 859 Pfam bZIP transcription factor 117 156 IPR004827 GO:0003700|GO:0006355
Cpe01g02608 859 MobiDBLite consensus disorder prediction 835 849 - -
Cpe01g02608 859 MobiDBLite consensus disorder prediction 829 859 - -
Cpe01g02608 859 Pfam Thioredoxin 454 555 IPR013766 -
Cpe01g02608 859 Gene3D - 117 166 - -
Cpe01g02608 859 SMART brlzneu 114 177 IPR004827 GO:0003700|GO:0006355
Cpe01g02608 859 Pfam Seed dormancy control 204 279 IPR025422 GO:0006351|GO:0043565
Cpe01g02608 859 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-2 426 859 - -
Cpe01g02608 859 Pfam Thioredoxin-like domain 596 771 - -
Cpe01g02608 859 SUPERFAMILY Thioredoxin-like 661 780 IPR036249 -
Cpe01g02608 859 SUPERFAMILY Thioredoxin-like 446 557 IPR036249 -
Cpe01g02608 859 Gene3D Glutaredoxin 441 568 - -
Cpe01g02608 859 CDD PDI_a_family 455 554 - -
Cpe01g02608 859 ProSiteProfiles DOG1 domain profile. 187 397 IPR025422 GO:0006351|GO:0043565
Cpe01g02608 859 ProSitePatterns Thioredoxin family active site. 473 491 IPR017937 -
Cpe01g02608 859 PANTHER PROTEIN DISULFIDE ISOMERASE 426 859 - -
Cpe01g02608 859 CDD bZIP_HBP1b-like 118 169 - -
Cpe01g02608 859 Gene3D Glutaredoxin 650 783 - -
Cpe01g02608 859 ProSiteProfiles Thioredoxin domain profile. 435 559 IPR013766 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00721 Cpe-Chr1:4193178 Cpe01g02608 Cpe-Chr1:21130185 8.08E-89 dispersed
Cpe01g02608 Cpe-Chr1:21130185 Cpe14g00573 Cpe-Chr14:3635226 3.69E-93 dispersed
Cpe20g00774 Cpe-Chr20:6932927 Cpe01g02608 Cpe-Chr1:21130185 5.99E-08 dispersed
Cpe13g01153 Cpe-Chr13:9138737 Cpe01g02608 Cpe-Chr1:21130185 0 transposed
Cpe01g02608 Cpe-Chr1:21130185 Cpe13g01152 Cpe-Chr13:9134720 4.06E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48963 PF13848 Thioredoxin_6 1.30E-12 CL0172 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02608 K09580 - csv:101217891 753.436