Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00007 ATGATGGCTGACATGGATGTGCACGCCGACGTCTCTCAGGTTTACGAGAAGTGTGCCTTGGATATGAGTACCTATGAGAATTTGCCTAACGCTTGCAATGCAGCATCCCTTGACTCTGCTGCTTCCATTCCTAAGGATGATACTGATGCTTCTTACGTTTTCGTCAACTCCACCGATGCTGCTACTTCCGATGATCATGTTGTGTCGGATCTCAATGGGCAACTAGAGTGTTCTCACAATGTCGATACGGAAATTAAGGTTCATAATGGGGAATTCAGTACGGACGATGGTAGGAAACCCGATTCATTTTTCGTTTCCAATGCATCTGAGGATTCACCGTTTAAATTTTCTGAGCATTTGAAAGTGAGTGACGCAATTCAGGATGAGACTAGAGTGGTAGATGTTCTTCAATCTTCTGACGCCAAGGTGGATGAACCGGAACCTGGACTGGATTCCTCCCAAAAAGTGGAAGAAACTCGAATCCTGGAGAACCAGGCTGTCAACGAATCGTTTGATGTAGAAGGTGAAATCCATGGGGTAGATGCTCCTCAAGAAGATGAAAACGTTCAGATTCAGGAGGAAAATCAAATAATTTCTACCTCTGAATCTTCAAACACGGATGCAAATCTTGGTGGACAAATCTTGGTGGTGTCTTCTCAAATGGCGGAAGATATTCAAATTCACGAGGATAATGGAGTAATGGGAATCATGAAGTCTTCTAATACCAAGGCAAATCGTGGGATAGACATTGAGGCGGAGTCTTCTCAAAACGCAGAGGGCATCCAATTTCGCAAGGAATATGGAATTGTTGCAATCAAGTTTTCTGATCCTGAGTCAAACACTGGGGAAGAAATTGAGGTGGAGTCTTCTCTAAAGGCAGACGAGGTTCAGAATCATGAAGAAAATGGCAGAGTGAAAGCCTTTAATTTGACTGACACTGCGGCTAATCTTAGGGGGAAAATTAAGTTGGAGTCTTCTAAGAAGGCAGACGATATTCAGAATGATGAGGAAAATGGCAGAATGAAAGCCTTCGATTTGTCTGGTACCGTGGCTAATCCTAGGGGGAAAATTGAGGTGGAGTCTTCTCAAAAGGGAGACGACATTCTGAATGATGAGGAAAATGGGAGAGTGAAAGCCTTCAATTTGTCTGATACTGAGGTGGACATTCAGAATCATAAGGAAAATGGCATAATGAAAGCCCCCAAGCTGTCTAATACCGAGGCAAATCCTAGGTCAGAAATTGAAGTGGAGTCTCCTGGGGAGGGGGAAGATATTAAGCTTAACGGGCAAAATGAAATAGTGGACGCCGTCAAATCTTCTGCTACCCTGGATAAGCGTGGGCAAGGTGAAGCAGTTCCCGAGGATAATGAAACAGTGGCTATTAATGAATTGTCTGATACCATAGAAAACCGCAGTGAAGAAACTGAGTTGGACTCTTTCGAGAGAGAAGAAGGCATTCGAGAATCACAAGATGCAAATGTGGAGGCTGCCGACTGCCATTCTGGCAAAGATAAGGTTGATGAGATGGTAAATAAAGCTGCGACAAGCGACCCAGTAGGAGGATTAGGAGAATCTCAAATTATAAGTATGGGTGCTGTTAAATCTGAGCTAGATCACCCTGATGGTTCAGTGGAGGACGTCAAGGGGGAATGTAAATTAGGGGTTGCTTTAAATGAAGAGAACTCTGAGAGAACTCAAGTTACAATTAATCCGGATGGTGAACATTGCCATGTTGTTGGTGAGGAACAAGAAAGTTTAAACAATGAGGATTCTCTTTTAGAGCCATCTGAAGAAAACAAAGTGGACATGGAGCAGCATTTGGCAGCAGCTCCTAGTCCATTGGTCAATTCAGAAGATGTAAATGGTTCTATCTCCACTAGCACTGCAACGAGTATGGATCAAGATGACCCTTTGAAGACTATTGATGACAAAGACACTGTAGCTAACACGAGCAGCTTCCATGACCATACTGAAACTTTATCTAGCTCTGTAGATCCTGATATTGATTCTGTTGAAACTCATAAATTAACTCATACAATGCTTATTAATGATCCAAAAGTGGAGTTAAATGAGATTACCGTGAATGAACAAGAGGTGAATCATGTGTTAGAACTAGAAGAAACTTCAGAAACGGCTTCCCATCCTAAAGTGGACGAATGTGACAGGGTTGAAGTTTTGGAAGGTACAGTCTCTGGAGATGAGATGTCCATTGCGCTTGATGAATCTAGAACTTCTTATGGTGATGATTCTGTTGCGGGAAGTCAATTAATCCCTGTGGAAGTTGAACCTGCACAAAGCGTTGAAACAGCAGTCTCTTCTGTTGTGATAGGAAATACTTCAGTTGAAATAAGGGAAATGTCCTGTACACACGGTCTTGATGATCCAGTACTGAGACCTGATCTTGAAGCCGAGGATTGTACAATGTCTGAAAATGTGGCTTCTGCTGGTGATTATGTCCAACTGGATAATGAAGTCCGTGAAAATCATGAGATTAGTCTTCTTGGTGACAATAATTTTGAAACCAAGTCTGAGAGTGGTGACATCGAAGAAGAAAACCAATCAACTTTCCCTTGTAATGATATGAGATCAGAATCTAACGATTTTATTTCAATTGAATGTGAAGAGAGAGGTTCTACTGTTCCTGAAGTTCCTAATGGTGACAATAAATCTACTGCGATCCAACAAAGTTCTGCTGTTGAAACAGATTCAGAATTCCGTGATAATGAACGTAGCTCAAGTCCAACTGCTAATGAGAAATCAGGAGAGAATATCGAGATTGCATCTTCCGTAGGAGGTGGTGGCAGAGATATAACTAGCGATGATTGCACATCAGAAACTGAAGTCAAGGGTTCTGCAGTAAACGATGAAGTGGATCTGAACCCAATGTCTGATATTGCCTCTCAAACTGACAGTAAACCGACGAAAGAAGAAACTGAGGTCGTTCATGAGAGTTGCCAGAATGAACCTTCCCCTATTTCCCCAGAAGGTTCTATTGAAGCTTTGGCAGGGAAGAATGTAGGTACTGAAGCAGGAACAAAGCCACTTAACTTTTTGGTTAGGGTACCTAAATTTGGTGATGTAAATATAAGAGAGCAGATTAAGTGTGCTCAAACGGAAGTTGATCAGACGACCAAGGATCGAGATGCCATTCGAGTTCAAATACAGATAATGAGGGCTGCATGGAAAGTGTTAAGTGATGATCTTGAAGCTGCAGTGTCAGAAGGAAGAGCTGCAAGAGACTTGCTGAGATTCAAACGACAGGAGATTGACTCTGTTCAATCAGTCATAACAAAAGTAAAGAATGCAATGTCCATTGGGGACATTGATGGCAGGGTGCGCAGCATTGAACACATTATAGAGCATGAAACACTGCCACTGAAAGAGGAAAAGCAATTGATTCGTGAAATCAAGCAATTGAAGCAGCTACGGGAACAGCTTTCATCTACTACGGGTAAGCAGGATGAGCTTCAACAGGCATTGGACCAGAAAGACCAGTTTGAAGAGCGCCTAAAGCTATTAAGAAAGGAGATGGATTTACTGAGAGGCAATGTTCTGAAAGCTGAATCAGTTATAAAGGCTGCTAAGAAGATATGTAATGATGAAAGCTTAAAGCTGGATGAATTGCAATCCAAGTTTAAAGCAGCAGATAAGATTCGCCAAGAAGCATATGCCAATTTACAGAGTACGAGGAAGCAATTATACGATAAGAACAAATACTACTGGAAGTATCGGGATGACGTGAAAGAAGCCAATGAAATCGCAACGAGTGGAGATGTAGAGAGACTGCAACGTTTTTCTGTTAATCAGGTGGAGTGCATGATGGAACTGTGGAACACAAATGCTGAGTTCAGGGAAGAATATATTAAGAGCAACATGAGAAGTACCCTGAGGCGACTAAAGACGTTGGATGGCCGCTCCCTTGGCCCCAATGAAGAGCCACATGCACTGAACCAGATTGTAAAGGAGAGACCAGCGAGGGACAGTTCTCTTTCAACAGTTTCAAAAACGCTGGAACCAGAAAACCTGATACCCGCTGAGAATATGAGAGATAATGATAAACCAGTGATCGAAGTAGTCAAAACAAAGAATCAACCGACAAAAAACAAGAAGCCCACGACAGTTGTGGCTTTAATGAATGGCCTTAGGAATATTTCTTGCGAGAATGACGTAGAAGAGCCACCACAACCCGTGGAGATTAAGCGAACAAGAGAGGAAGAGGAGTTGGCGGCGAAAGCAGAAGAGTTGAGAAAGAAAGAGGAAGCAATCAAGTTGAAGGAGCAACATAAGTTGGAAGAGAAGACCAAAGCCAAAGAGGCATTGGAGAGGAAAAAGAGAAATGCTGAGAAAGCCCACGCTAGGGCGGTAACTAAAGCAAGAAAAGAGGCGGAAGAGAGAGAGAAGCTAAGGGAGAAGAGAGCAAAAAAGAAGGCAAGGAAGATGGCAGCAGCTGAGACGGAAGCTGGAAATGGTTTGGAAGAAAAGGAATCTGGTATAATCACGGAGAGCACCCCGAAGGAGGTGTCTGAAAACACAGGTAAACAGGGGACGGCTGCGAAGAGGCCACCAAAAGCGTCGCAGTCGCAGTACACCAAGCACAGCAAGACAAAGTCAACAATTCCTCCACCTCTTCGAAATCGGAGTAAGAGGGGGATGCAGCCATGGATGTGGGTTCTTTTGACCACCCTGATTGTTTTCGTGGTGTTCTTCGTGGGGGCAACAGCGGCTTCTCTACTAGGTCTTGGTTTCTAA 4749 43.17 MMADMDVHADVSQVYEKCALDMSTYENLPNACNAASLDSAASIPKDDTDASYVFVNSTDAATSDDHVVSDLNGQLECSHNVDTEIKVHNGEFSTDDGRKPDSFFVSNASEDSPFKFSEHLKVSDAIQDETRVVDVLQSSDAKVDEPEPGLDSSQKVEETRILENQAVNESFDVEGEIHGVDAPQEDENVQIQEENQIISTSESSNTDANLGGQILVVSSQMAEDIQIHEDNGVMGIMKSSNTKANRGIDIEAESSQNAEGIQFRKEYGIVAIKFSDPESNTGEEIEVESSLKADEVQNHEENGRVKAFNLTDTAANLRGKIKLESSKKADDIQNDEENGRMKAFDLSGTVANPRGKIEVESSQKGDDILNDEENGRVKAFNLSDTEVDIQNHKENGIMKAPKLSNTEANPRSEIEVESPGEGEDIKLNGQNEIVDAVKSSATLDKRGQGEAVPEDNETVAINELSDTIENRSEETELDSFEREEGIRESQDANVEAADCHSGKDKVDEMVNKAATSDPVGGLGESQIISMGAVKSELDHPDGSVEDVKGECKLGVALNEENSERTQVTINPDGEHCHVVGEEQESLNNEDSLLEPSEENKVDMEQHLAAAPSPLVNSEDVNGSISTSTATSMDQDDPLKTIDDKDTVANTSSFHDHTETLSSSVDPDIDSVETHKLTHTMLINDPKVELNEITVNEQEVNHVLELEETSETASHPKVDECDRVEVLEGTVSGDEMSIALDESRTSYGDDSVAGSQLIPVEVEPAQSVETAVSSVVIGNTSVEIREMSCTHGLDDPVLRPDLEAEDCTMSENVASAGDYVQLDNEVRENHEISLLGDNNFETKSESGDIEEENQSTFPCNDMRSESNDFISIECEERGSTVPEVPNGDNKSTAIQQSSAVETDSEFRDNERSSSPTANEKSGENIEIASSVGGGGRDITSDDCTSETEVKGSAVNDEVDLNPMSDIASQTDSKPTKEETEVVHESCQNEPSPISPEGSIEALAGKNVGTEAGTKPLNFLVRVPKFGDVNIREQIKCAQTEVDQTTKDRDAIRVQIQIMRAAWKVLSDDLEAAVSEGRAARDLLRFKRQEIDSVQSVITKVKNAMSIGDIDGRVRSIEHIIEHETLPLKEEKQLIREIKQLKQLREQLSSTTGKQDELQQALDQKDQFEERLKLLRKEMDLLRGNVLKAESVIKAAKKICNDESLKLDELQSKFKAADKIRQEAYANLQSTRKQLYDKNKYYWKYRDDVKEANEIATSGDVERLQRFSVNQVECMMELWNTNAEFREEYIKSNMRSTLRRLKTLDGRSLGPNEEPHALNQIVKERPARDSSLSTVSKTLEPENLIPAENMRDNDKPVIEVVKTKNQPTKNKKPTTVVALMNGLRNISCENDVEEPPQPVEIKRTREEEELAAKAEELRKKEEAIKLKEQHKLEEKTKAKEALERKKRNAEKAHARAVTKARKEAEEREKLREKRAKKKARKMAAAETEAGNGLEEKESGIITESTPKEVSENTGKQGTAAKRPPKASQSQYTKHSKTKSTIPPPLRNRSKRGMQPWMWVLLTTLIVFVVFFVGATAASLLGLGF 1582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47394 54188 - Cp4.1LG02g08540.1 Cpe02g00007 463956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00007 1582 MobiDBLite consensus disorder prediction 1426 1547 - -
Cpe02g00007 1582 Coils Coil 1191 1211 - -
Cpe02g00007 1582 Coils Coil 1401 1485 - -
Cpe02g00007 1582 MobiDBLite consensus disorder prediction 876 998 - -
Cpe02g00007 1582 MobiDBLite consensus disorder prediction 883 901 - -
Cpe02g00007 1582 MobiDBLite consensus disorder prediction 1501 1542 - -
Cpe02g00007 1582 Coils Coil 1129 1183 - -
Cpe02g00007 1582 MobiDBLite consensus disorder prediction 471 493 - -
Cpe02g00007 1582 MobiDBLite consensus disorder prediction 1426 1470 - -
Cpe02g00007 1582 PANTHER CALPONIN-LIKE DOMAIN PROTEIN 475 1574 - -
Cpe02g00007 1582 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 475 1574 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00007 - - - cmos:111446165 2860.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00007 Cpe-Chr2:47394 Cpe06g00686 Cpe-Chr6:4270826 9.95E-35 dispersed
Cpe02g00007 Cpe-Chr2:47394 Cpe02g00701 Cpe-Chr2:4427960 1.38E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g25 Blo01g01657 . . . Bpe02g00286 . . . . . Cma01g02052 Cma09g00011 Car01g01616 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02435 Csa04g02749 . . . . . . . . . . . Cmo01g02107 Cmo09g00011 . . . . . Cpe02g00007 . . . . . . . . . . . . . . . . Chy07g00437 Cme07g00014
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011484 0 2 2 0 2 0 2 0 0 1 0 1 2 1 1 2 0 0 1 0 1 1 1 1 1 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00007 Cpe_Chr02 FPKM 37.784096 41.408897 36.510117 33.8573 38.663883 36.592506 39.445072 28.417032 27.032976 27.685583
Cpe02g00007 Cpe_Chr00 FPKM 13.754598 14.387372 12.762454 11.111995 13.476269 13.79839 12.691566 8.582443 9.151479 9.462436