Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00009 ATGGCTGCCTCGTGGTCGTGGTCGTGGCCGTGGCCGATGCAACCTTCATCATCCACCTCTGTGAGACCGTGTAAGGGCCTTCAGGAGAAAATAGCGTATCTAGGGCTGAGTGTCGGCAGCAGAAAACAGGGGTATCAGCGGGAGAGAGCAATGACTGTGAGCATGGCAAAATACAAATACAAAGGAACGCGGATGAGAGAGAAGCTTCTGACGGAGATGATTGAGAAGAAGGTGATGGAAGCAAAGGAGGTTTGCAAGGGGGACGAGACCTCAGGCTCTGATGAGTGTAAGGTGGCCTGGGACCAGGTGGAGGAGGTTAGCCAAGCTAAGGCCCATCTCCTACGTAAACTACAGACTCAAGATCCCCTGGAGTATTTCTGTCGAGACAATCCTCAGCTTGACGAGTGTCAAATCTACGAGGAATGA 426 52.11 MAASWSWSWPWPMQPSSSTSVRPCKGLQEKIAYLGLSVGSRKQGYQRERAMTVSMAKYKYKGTRMREKLLTEMIEKKVMEAKEVCKGDETSGSDECKVAWDQVEEVSQAKAHLLRKLQTQDPLEYFCRDNPQLDECQIYEE 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 71688 72113 - Cp4.1LG02g08630.1 Cpe02g00009 463958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00009 141 PANTHER CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTIC 40 141 IPR039314 -
Cpe02g00009 141 PANTHER CALVIN CYCLE PROTEIN CP12-3, CHLOROPLASTIC 40 141 - -
Cpe02g00009 141 SMART CP12_2 70 141 IPR003823 -
Cpe02g00009 141 Pfam CP12 domain 70 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00009 - - - cmos:111446478 267.314
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00009 Cpe-Chr2:71688 Cpe17g00748 Cpe-Chr17:5912115 1.29E-17 dispersed
Cpe02g00009 Cpe-Chr2:71688 Cpe12g00891 Cpe-Chr12:7745264 7.39E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g29 Blo01g01656 . . . Bpe02g00287 . . Bma01g02426 . . . . Car01g01614 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe02g00009 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000970 4 2 5 9 4 2 4 2 2 2 2 2 3 2 2 3 2 3 4 2 2 2 2 2 3 2 3 3 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00009 Cpe_Chr02 FPKM 14.118718 17.26343 7.789331 6.93615 76.786484 77.357063 77.401825 2.961452 3.826178 3.581743