Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00010 TGGCTGCTATGGTCGAGCGAAAATTTAACCCAGCTCTTCTCCGAAGCTCCTCGTTTACGTATCTGGGATCCATCTCTCCAATTTAGGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGTTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCCACTCTTCTCTTATCGAACATGTACCAGCGCCCCGACATGATCACCCCTGGTGTCGATGCTCAGGGTCAGCCCATAGATCCCCGCAAGATTCAGGAACACTTCGAGGATTTCTACGAAGACATTTACGAGGAACTCGGAAAGTTCGGTGAGATCGAGAGCCTCAACATCTGTGATAATCTCGCCGACCACATGATCGGCAATGTTTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCCGCACTTCAAGCGTTGCAAGGGCGATTCTACTCTGGTCGACCCATAATCGCAGATTTTTCTCCGGTGACAGATTTCCGCGAGGCCACGTGCCGCCAGTACGAGGAGAATAATTGTAATCGAGGTGGATATTGCAATTTTATGCATGTTAAGATGATTGGGAAGGACTTGAGGAGGAAGCTGTTCGGTAGTAGGTTCCGGGGTTATAGGCGGAGCCGTAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAGGACTACGATAGGCGTGAGAGGGATTATAGAGATCGTGACCATCGTGGAAACGGACGGAGCAAGGAGCGTCCAGATAGGTTTGACAGAGATGGGGGAAGGAGAAGGCATGGAAGCCCCAGGCGAAGCAGAAGTCCTGTCAGAGAAGGAAGCGAAGAGCGCCGAGCCCGTATTGAACAGTGGAACAGAGAGAGGGAGGAGAAGCAGCAAGAACAGGATAGAAAATACGTTGGCATGTTAGCTAGCAATTCAAATTCCGATTACTTTTTCACTATCAGTCGGCTGGGAAGTACATGGAGATGTTGTCCAACTTGTGGGGGAAGGAGTTGCATTTGA 1005 51.14 WLLWSSENLTQLFSEAPRLRIWDPSLQFRDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRFDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQQEQDRKYVGMLASNSNSDYFFTISRLGSTWRCCPTCGGRSCI 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 76608 78361 + Cp4.1LG02g08720.1 Cpe02g00010 463959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00010 334 PANTHER SPLICING FACTOR U2AF SMALL SUBUNIT A 29 292 - -
Cpe02g00010 334 Coils Coil 274 294 - -
Cpe02g00010 334 MobiDBLite consensus disorder prediction 266 295 - -
Cpe02g00010 334 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 29 292 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cpe02g00010 334 SMART c3hfinal6 29 55 IPR000571 GO:0046872
Cpe02g00010 334 SMART c3hfinal6 164 190 IPR000571 GO:0046872
Cpe02g00010 334 SUPERFAMILY RNA-binding domain, RBD 93 165 IPR035979 GO:0003676
Cpe02g00010 334 MobiDBLite consensus disorder prediction 218 259 - -
Cpe02g00010 334 Gene3D - 59 161 IPR012677 -
Cpe02g00010 334 SMART rrm2_1 89 158 IPR003954 GO:0003676
Cpe02g00010 334 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 155 IPR000504 GO:0003723
Cpe02g00010 334 ProSiteProfiles Zinc finger C3H1-type profile. 164 191 IPR000571 GO:0046872
Cpe02g00010 334 PRINTS U2 auxiliary factor small subunit signature 53 73 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cpe02g00010 334 PRINTS U2 auxiliary factor small subunit signature 91 106 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cpe02g00010 334 PRINTS U2 auxiliary factor small subunit signature 146 170 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cpe02g00010 334 PRINTS U2 auxiliary factor small subunit signature 181 193 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cpe02g00010 334 PRINTS U2 auxiliary factor small subunit signature 119 141 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cpe02g00010 334 PRINTS U2 auxiliary factor small subunit signature 34 53 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cpe02g00010 334 ProSiteProfiles Zinc finger C3H1-type profile. 28 56 IPR000571 GO:0046872
Cpe02g00010 334 CDD RRM_U2AF35B 60 161 - -
Cpe02g00010 334 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 162 IPR000504 GO:0003723
Cpe02g00010 334 MobiDBLite consensus disorder prediction 211 295 - -
Cpe02g00010 334 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 166 189 IPR000571 GO:0046872
Cpe02g00010 334 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 31 54 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00010 K12836 U2AF1; splicing factor U2AF 35 kDa subunit - csv:101208972 414.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00010 Cpe-Chr2:76608 Cpe20g00708 Cpe-Chr20:5939747 1.14E-122 dispersed
Cpe02g00010 Cpe-Chr2:76608 Cpe19g00452 Cpe-Chr19:4008577 2.81E-116 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g31 . . . Bda03g00337 . Bpe04g00296 Bma04g00306 . . . Cma01g02046 Cma09g00013 Car01g01612 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02431 Csa04g02745 . . Blo17g00911 . . . . . . . . Cmo01g02103 . . . . Car09g00013 . Cpe02g00010 . . . . . . . Cla11g01859 Cam11g1926 Cec11g1953 Cco11g1965 Clacu11g2091 Cmu11g1894 Cre11g2302 . . Chy07g00433 Cme07g00017
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000890 2 7 1 3 3 1 5 1 1 2 3 2 5 3 3 2 1 3 4 1 3 1 2 3 4 3 2 6 5 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00010 Cpe_Chr02 FPKM 0.353909 0.0 4.248538 5.239089 13.870538 12.296279 12.906204 0.073465 0.0 0.065595