Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00012 ATGGACGATACCGATAAGGCGGGGCAGGATTTTCTCCACGGCCCCGGCGCAGGTCTTGCTCAAAACCAAGTTCAAGTTCGGGAGCCAGGATTTGCAGTGACAAAGGAGGATCAGAACCTTAAAGAAGATGAGCAATCAGCCTGCCCAATGTTTAACGACGTTCAGTTTCACGAACTTCCTTGCCTTCAAAAACCGATTGAGGACGATGAGGATTTACCTGATCATACTGCCGTTGAAGCTGCTGCTGCTGATGCAAAAGTTGTGGAGGTTGCTCTGGATGAACCGCCTGAAAGTAAAGAAGATGCCATGGAGACTGATCCTCTAATTGGGAACGAAGATAATCCTTCTGCACCTCCCATTTCACCTGACATCTCTCTGCCTTCAAATGCCGCAAATCAGAGTGCGGCACTCGTGAAGAATGCATGGATTGATATTGAAATGGCTGAGGGTGACGAATCGGGGACACCAGAGGATAGGGTGGCATTTATGAAGGAGATCGAAAATTTCCACCGGGAGAGGGCTTTGGAGTTTAAGCCTCCTAAGTTTTATGGGGAGCCACTAAACTGCCTGAAGTTATGGAGAGCTGTTATTAGATTGGGAGGCTATGATGTGGTGACTGCATCTAAATTATGGCGACAAGTAGGAGAGTCTTTCCATCCCCCAAAAACATGCACGACAGTCTCTTGGACATTTCGCATTTTCTATGAGAAGGCACTTTTAGAGTATGAAAAGCATAAAAGGCTAACGGGGGAACTGCAACTACCTGTTGGATCCCTTCCTCAGTCTACAAATACAGAAAAGGAGACTGGCTACTACCAAGCTCCTGGCTCAGGTAGGGCCCGAAGGGATGCTGCAGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTCTGGTTGGATATGGCGAGGATGCTGAGCCTATAATAAAGGACAAGAACTTGGGCTCTACATCTAAGCGTGAAAAAAATCTCAAGAACATTGGTTTTCCAAAACACAAGATGCTAACTAACACAGACCACGTTGGAAGAGATGCAGATTTTGAATCAGACAAGCAAGTGATGACAACAGTTATGGATGTTGGACCTCCAGCTGATTGGGTCAAAATTAATGTGCGTGAGATGAATGACTGCTTTGAAGTATATGCATTAGTTCCAGGGCTTTTACGAGAGGAGGTTCGGGTTCAATCCGATCCAGCTGGACGTCTGGTAATTACTGGTCAACCTGAGCAGGTTGATAATCCTTGGGGCATCACGCCTTTTAAAAAGGTGGTGAGCTTACCCACAAGAATTGATCCTCTTCAGACATCTGCCGTGGTGAGCCTTCATGGCCGACTTTTTGTGCGAGCCCCTTTTGAGCAAGGATCCATGTGA 1368 47.22 MDDTDKAGQDFLHGPGAGLAQNQVQVREPGFAVTKEDQNLKEDEQSACPMFNDVQFHELPCLQKPIEDDEDLPDHTAVEAAAADAKVVEVALDEPPESKEDAMETDPLIGNEDNPSAPPISPDISLPSNAANQSAALVKNAWIDIEMAEGDESGTPEDRVAFMKEIENFHRERALEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRLTGELQLPVGSLPQSTNTEKETGYYQAPGSGRARRDAAARAMQGWHAQRLVGYGEDAEPIIKDKNLGSTSKREKNLKNIGFPKHKMLTNTDHVGRDADFESDKQVMTTVMDVGPPADWVKINVREMNDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEQVDNPWGITPFKKVVSLPTRIDPLQTSAVVSLHGRLFVRAPFEQGSM 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 85595 90936 - Cp4.1LG02g08500.1 Cpe02g00012 463961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00012 455 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 106 452 - -
Cpe02g00012 455 SUPERFAMILY HSP20-like chaperones 362 450 IPR008978 -
Cpe02g00012 455 Pfam Hsp20/alpha crystallin family 371 450 IPR002068 -
Cpe02g00012 455 MobiDBLite consensus disorder prediction 93 122 - -
Cpe02g00012 455 CDD ARID 158 243 - -
Cpe02g00012 455 Gene3D - 157 254 IPR036431 GO:0003677
Cpe02g00012 455 SMART ARID_2 153 243 - -
Cpe02g00012 455 MobiDBLite consensus disorder prediction 257 277 - -
Cpe02g00012 455 SUPERFAMILY ARID-like 154 252 IPR036431 GO:0003677
Cpe02g00012 455 SMART bright_3 157 248 IPR001606 GO:0003677
Cpe02g00012 455 MobiDBLite consensus disorder prediction 1 24 - -
Cpe02g00012 455 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 106 452 IPR045147 GO:0006357
Cpe02g00012 455 ProSiteProfiles ARID domain profile. 156 247 IPR001606 GO:0003677
Cpe02g00012 455 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 354 455 IPR002068 -
Cpe02g00012 455 Gene3D - 344 454 IPR008978 -
Cpe02g00012 455 Pfam ARID/BRIGHT DNA binding domain 160 243 IPR001606 GO:0003677
Cpe02g00012 455 MobiDBLite consensus disorder prediction 257 271 - -
Cpe02g00012 455 CDD ACD_sHsps-like 369 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00012 - - - zju:107416079 534.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00012 Cpe-Chr2:85595 Cpe06g00043 Cpe-Chr6:227366 2.67E-07 dispersed
Cpe14g01071 Cpe-Chr14:8914368 Cpe02g00012 Cpe-Chr2:85595 1.33E-117 wgd
Cpe02g00012 Cpe-Chr2:85595 Cpe08g01275 Cpe-Chr8:9220943 7.37E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g36 . . . . . . . . . . Cma01g02043 . Car01g01610 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda01g01577 . . Bma01g00689 . . Cmo01g02101 . . . . . . Cpe02g00012 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe17g00251 . 45 384 ARID Transcription Factor Family AT1G04880 60.3 4.8e-106 382.1
Cpe12g00084 . 1 373 ARID Transcription Factor Family AT1G04880 54.2 6.5e-103 371.7
Cpe02g00012 . 143 422 ARID Transcription Factor Family AT1G20910 67.5 2.0e-103 373.2
Cpe08g01275 . 207 478 ARID Transcription Factor Family AT1G20910 59.7 8.8e-88 321.2
Cpe14g01071 . 163 433 ARID Transcription Factor Family AT1G20910 50.9 7.0e-69 258.5
Cpe02g00052 CCT 16 312 ARID Transcription Factor Family AT1G76110 65.3 1.9e-110 396.4
Cpe06g00043 CCT 16 284 ARID Transcription Factor Family AT1G76110 59.4 1.4e-94 343.6
Cpe02g00012 . 52 452 ARID Transcription Factor Family AT1G76510 60.4 2.2e-127 453.0
Cpe08g01275 . 198 508 ARID Transcription Factor Family AT1G76510 61.7 2.5e-107 386.3
Cpe14g01071 . 154 463 ARID Transcription Factor Family AT1G76510 53.2 1.4e-86 317.4
Cpe02g01754 . 113 875 ARID Transcription Factor Family AT3G43240 59.8 3.7e-260 894.8
Cpe03g01028 . 1 781 ARID Transcription Factor Family AT3G43240 58.3 4.1e-259 891.3
Cpe12g00555 . 2 771 ARID Transcription Factor Family AT3G43240 57.1 7.9e-255 877.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48965 PF00011 HSP20 0.00015 CL0190 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00012 Cpe_Chr02 FPKM 1.170427 1.026795 0.281089 0.585303 0.0 0.0 0.211264 35.559181 35.142269 34.179348