Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe02g00012 | ATGGACGATACCGATAAGGCGGGGCAGGATTTTCTCCACGGCCCCGGCGCAGGTCTTGCTCAAAACCAAGTTCAAGTTCGGGAGCCAGGATTTGCAGTGACAAAGGAGGATCAGAACCTTAAAGAAGATGAGCAATCAGCCTGCCCAATGTTTAACGACGTTCAGTTTCACGAACTTCCTTGCCTTCAAAAACCGATTGAGGACGATGAGGATTTACCTGATCATACTGCCGTTGAAGCTGCTGCTGCTGATGCAAAAGTTGTGGAGGTTGCTCTGGATGAACCGCCTGAAAGTAAAGAAGATGCCATGGAGACTGATCCTCTAATTGGGAACGAAGATAATCCTTCTGCACCTCCCATTTCACCTGACATCTCTCTGCCTTCAAATGCCGCAAATCAGAGTGCGGCACTCGTGAAGAATGCATGGATTGATATTGAAATGGCTGAGGGTGACGAATCGGGGACACCAGAGGATAGGGTGGCATTTATGAAGGAGATCGAAAATTTCCACCGGGAGAGGGCTTTGGAGTTTAAGCCTCCTAAGTTTTATGGGGAGCCACTAAACTGCCTGAAGTTATGGAGAGCTGTTATTAGATTGGGAGGCTATGATGTGGTGACTGCATCTAAATTATGGCGACAAGTAGGAGAGTCTTTCCATCCCCCAAAAACATGCACGACAGTCTCTTGGACATTTCGCATTTTCTATGAGAAGGCACTTTTAGAGTATGAAAAGCATAAAAGGCTAACGGGGGAACTGCAACTACCTGTTGGATCCCTTCCTCAGTCTACAAATACAGAAAAGGAGACTGGCTACTACCAAGCTCCTGGCTCAGGTAGGGCCCGAAGGGATGCTGCAGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTCTGGTTGGATATGGCGAGGATGCTGAGCCTATAATAAAGGACAAGAACTTGGGCTCTACATCTAAGCGTGAAAAAAATCTCAAGAACATTGGTTTTCCAAAACACAAGATGCTAACTAACACAGACCACGTTGGAAGAGATGCAGATTTTGAATCAGACAAGCAAGTGATGACAACAGTTATGGATGTTGGACCTCCAGCTGATTGGGTCAAAATTAATGTGCGTGAGATGAATGACTGCTTTGAAGTATATGCATTAGTTCCAGGGCTTTTACGAGAGGAGGTTCGGGTTCAATCCGATCCAGCTGGACGTCTGGTAATTACTGGTCAACCTGAGCAGGTTGATAATCCTTGGGGCATCACGCCTTTTAAAAAGGTGGTGAGCTTACCCACAAGAATTGATCCTCTTCAGACATCTGCCGTGGTGAGCCTTCATGGCCGACTTTTTGTGCGAGCCCCTTTTGAGCAAGGATCCATGTGA | 1368 | 47.22 | MDDTDKAGQDFLHGPGAGLAQNQVQVREPGFAVTKEDQNLKEDEQSACPMFNDVQFHELPCLQKPIEDDEDLPDHTAVEAAAADAKVVEVALDEPPESKEDAMETDPLIGNEDNPSAPPISPDISLPSNAANQSAALVKNAWIDIEMAEGDESGTPEDRVAFMKEIENFHRERALEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRLTGELQLPVGSLPQSTNTEKETGYYQAPGSGRARRDAAARAMQGWHAQRLVGYGEDAEPIIKDKNLGSTSKREKNLKNIGFPKHKMLTNTDHVGRDADFESDKQVMTTVMDVGPPADWVKINVREMNDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEQVDNPWGITPFKKVVSLPTRIDPLQTSAVVSLHGRLFVRAPFEQGSM | 455 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 85595 | 90936 | - | Cp4.1LG02g08500.1 | Cpe02g00012 | 463961 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe02g00012 | 455 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 | 106 | 452 | - | - | |
Cpe02g00012 | 455 | SUPERFAMILY | HSP20-like chaperones | 362 | 450 | IPR008978 | - | |
Cpe02g00012 | 455 | Pfam | Hsp20/alpha crystallin family | 371 | 450 | IPR002068 | - | |
Cpe02g00012 | 455 | MobiDBLite | consensus disorder prediction | 93 | 122 | - | - | |
Cpe02g00012 | 455 | CDD | ARID | 158 | 243 | - | - | |
Cpe02g00012 | 455 | Gene3D | - | 157 | 254 | IPR036431 | GO:0003677 | |
Cpe02g00012 | 455 | SMART | ARID_2 | 153 | 243 | - | - | |
Cpe02g00012 | 455 | MobiDBLite | consensus disorder prediction | 257 | 277 | - | - | |
Cpe02g00012 | 455 | SUPERFAMILY | ARID-like | 154 | 252 | IPR036431 | GO:0003677 | |
Cpe02g00012 | 455 | SMART | bright_3 | 157 | 248 | IPR001606 | GO:0003677 | |
Cpe02g00012 | 455 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cpe02g00012 | 455 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT | 106 | 452 | IPR045147 | GO:0006357 | |
Cpe02g00012 | 455 | ProSiteProfiles | ARID domain profile. | 156 | 247 | IPR001606 | GO:0003677 | |
Cpe02g00012 | 455 | ProSiteProfiles | Small heat shock protein (sHSP) domain profile. | 354 | 455 | IPR002068 | - | |
Cpe02g00012 | 455 | Gene3D | - | 344 | 454 | IPR008978 | - | |
Cpe02g00012 | 455 | Pfam | ARID/BRIGHT DNA binding domain | 160 | 243 | IPR001606 | GO:0003677 | |
Cpe02g00012 | 455 | MobiDBLite | consensus disorder prediction | 257 | 271 | - | - | |
Cpe02g00012 | 455 | CDD | ACD_sHsps-like | 369 | 449 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g00012 | Cpe-Chr2:85595 | Cpe06g00043 | Cpe-Chr6:227366 | 2.67E-07 | dispersed | |
Cpe14g01071 | Cpe-Chr14:8914368 | Cpe02g00012 | Cpe-Chr2:85595 | 1.33E-117 | wgd | |
Cpe02g00012 | Cpe-Chr2:85595 | Cpe08g01275 | Cpe-Chr8:9220943 | 7.37E-136 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48965 | PF00011 | HSP20 | 0.00015 | CL0190 | Cpe | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe02g00012 | - | - | zju:107416079 | 534.643 |