Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00012 ATGGACGATACCGATAAGGCGGGGCAGGATTTTCTCCACGGCCCCGGCGCAGGTCTTGCTCAAAACCAAGTTCAAGTTCGGGAGCCAGGATTTGCAGTGACAAAGGAGGATCAGAACCTTAAAGAAGATGAGCAATCAGCCTGCCCAATGTTTAACGACGTTCAGTTTCACGAACTTCCTTGCCTTCAAAAACCGATTGAGGACGATGAGGATTTACCTGATCATACTGCCGTTGAAGCTGCTGCTGCTGATGCAAAAGTTGTGGAGGTTGCTCTGGATGAACCGCCTGAAAGTAAAGAAGATGCCATGGAGACTGATCCTCTAATTGGGAACGAAGATAATCCTTCTGCACCTCCCATTTCACCTGACATCTCTCTGCCTTCAAATGCCGCAAATCAGAGTGCGGCACTCGTGAAGAATGCATGGATTGATATTGAAATGGCTGAGGGTGACGAATCGGGGACACCAGAGGATAGGGTGGCATTTATGAAGGAGATCGAAAATTTCCACCGGGAGAGGGCTTTGGAGTTTAAGCCTCCTAAGTTTTATGGGGAGCCACTAAACTGCCTGAAGTTATGGAGAGCTGTTATTAGATTGGGAGGCTATGATGTGGTGACTGCATCTAAATTATGGCGACAAGTAGGAGAGTCTTTCCATCCCCCAAAAACATGCACGACAGTCTCTTGGACATTTCGCATTTTCTATGAGAAGGCACTTTTAGAGTATGAAAAGCATAAAAGGCTAACGGGGGAACTGCAACTACCTGTTGGATCCCTTCCTCAGTCTACAAATACAGAAAAGGAGACTGGCTACTACCAAGCTCCTGGCTCAGGTAGGGCCCGAAGGGATGCTGCAGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTCTGGTTGGATATGGCGAGGATGCTGAGCCTATAATAAAGGACAAGAACTTGGGCTCTACATCTAAGCGTGAAAAAAATCTCAAGAACATTGGTTTTCCAAAACACAAGATGCTAACTAACACAGACCACGTTGGAAGAGATGCAGATTTTGAATCAGACAAGCAAGTGATGACAACAGTTATGGATGTTGGACCTCCAGCTGATTGGGTCAAAATTAATGTGCGTGAGATGAATGACTGCTTTGAAGTATATGCATTAGTTCCAGGGCTTTTACGAGAGGAGGTTCGGGTTCAATCCGATCCAGCTGGACGTCTGGTAATTACTGGTCAACCTGAGCAGGTTGATAATCCTTGGGGCATCACGCCTTTTAAAAAGGTGGTGAGCTTACCCACAAGAATTGATCCTCTTCAGACATCTGCCGTGGTGAGCCTTCATGGCCGACTTTTTGTGCGAGCCCCTTTTGAGCAAGGATCCATGTGA 1368 47.22 MDDTDKAGQDFLHGPGAGLAQNQVQVREPGFAVTKEDQNLKEDEQSACPMFNDVQFHELPCLQKPIEDDEDLPDHTAVEAAAADAKVVEVALDEPPESKEDAMETDPLIGNEDNPSAPPISPDISLPSNAANQSAALVKNAWIDIEMAEGDESGTPEDRVAFMKEIENFHRERALEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRLTGELQLPVGSLPQSTNTEKETGYYQAPGSGRARRDAAARAMQGWHAQRLVGYGEDAEPIIKDKNLGSTSKREKNLKNIGFPKHKMLTNTDHVGRDADFESDKQVMTTVMDVGPPADWVKINVREMNDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEQVDNPWGITPFKKVVSLPTRIDPLQTSAVVSLHGRLFVRAPFEQGSM 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 85595 90936 - Cp4.1LG02g08500.1 Cpe02g00012 463961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00012 455 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 106 452 - -
Cpe02g00012 455 SUPERFAMILY HSP20-like chaperones 362 450 IPR008978 -
Cpe02g00012 455 Pfam Hsp20/alpha crystallin family 371 450 IPR002068 -
Cpe02g00012 455 MobiDBLite consensus disorder prediction 93 122 - -
Cpe02g00012 455 CDD ARID 158 243 - -
Cpe02g00012 455 Gene3D - 157 254 IPR036431 GO:0003677
Cpe02g00012 455 SMART ARID_2 153 243 - -
Cpe02g00012 455 MobiDBLite consensus disorder prediction 257 277 - -
Cpe02g00012 455 SUPERFAMILY ARID-like 154 252 IPR036431 GO:0003677
Cpe02g00012 455 SMART bright_3 157 248 IPR001606 GO:0003677
Cpe02g00012 455 MobiDBLite consensus disorder prediction 1 24 - -
Cpe02g00012 455 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 106 452 IPR045147 GO:0006357
Cpe02g00012 455 ProSiteProfiles ARID domain profile. 156 247 IPR001606 GO:0003677
Cpe02g00012 455 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 354 455 IPR002068 -
Cpe02g00012 455 Gene3D - 344 454 IPR008978 -
Cpe02g00012 455 Pfam ARID/BRIGHT DNA binding domain 160 243 IPR001606 GO:0003677
Cpe02g00012 455 MobiDBLite consensus disorder prediction 257 271 - -
Cpe02g00012 455 CDD ACD_sHsps-like 369 449 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00012 Cpe-Chr2:85595 Cpe06g00043 Cpe-Chr6:227366 2.67E-07 dispersed
Cpe14g01071 Cpe-Chr14:8914368 Cpe02g00012 Cpe-Chr2:85595 1.33E-117 wgd
Cpe02g00012 Cpe-Chr2:85595 Cpe08g01275 Cpe-Chr8:9220943 7.37E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48965 PF00011 HSP20 0.00015 CL0190 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00012 - - zju:107416079 534.643