Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00013 ATGGAGAAGGGGCCGACCACTGTTTCAGCCATGGAGGCGTTCGAGAAGCTAGAGAAGGTCGGAGAAGGAACTTATGGCAAAGTTTATAGGGCAAGGGAGAAGGCCACCGGCAAGATTGTAGCGCTTAAGAAGACGCGCCTCCACGAGGATGAGGAAGGTGTTCCTCCCACTACTCTTAGAGAGGTTTCAATTCTTCGAATGCTTTCTCGTGATCCTCATATTGTTAGGTTGATGGATGTGAAACAAGGGCAGAACAAGGAAGGGAAAACCGTTCTTTACTTGGTGTTTGAATACATGGATACTGATCTGAAAAAATTCATCAAGAGTTTCCGTCATACGGGAGAAAGCATTCCTGTCAACACTGTCAAGAGTCTGATGTACCAACTCTGCAAGGGCGTTGCCTTCTGCCATGGTCATGGAATCCTGCACAGGGACCTGAAACCACACAATCTCTTGATGGACCGAAAGACTATGATGCTCAAAATTGCAGACCTTGGACTCGCTCGAGCATTTACTTTGCCAATTAAGAAAGCTCCTGAAGTTCTGTTGGGAGCTACTCATTACTCCACTGCTGTAGATATGTGGTCTGTTGGCTGCATATTCGCCGAACTTGCCACCAAGCAGGCGCTCTTTCCTGGAGATTCTGAGTTGCAACAGCTCCTTCATATCTTCAGGCTATTAGGGACCCCAAATGAAAAAGTTTGGCCTGGTGTGAGCAAACTAATGAACTGGCATGAGTATCCCCAATGGAACCCCCAAAGCCTTTCAACAGCCGTCCCCAACTTGGATGATAAAGCGCTAGATCTGCTTGCGCAAATGTTGAAGTATGAACCCTCAAAGCGTATTTCAGCGAAGAGAGCAATGGAACATCCTTATTTTGATGACTTGAACAAGGCATATCTCTGA 906 46.69 MEKGPTTVSAMEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKFIKSFRHTGESIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTLPIKKAPEVLLGATHYSTAVDMWSVGCIFAELATKQALFPGDSELQQLLHIFRLLGTPNEKVWPGVSKLMNWHEYPQWNPQSLSTAVPNLDDKALDLLAQMLKYEPSKRISAKRAMEHPYFDDLNKAYL 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 91371 93856 - Cp4.1LG02g08530.1 Cpe02g00013 463962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00013 301 PANTHER - 7 299 - -
Cpe02g00013 301 SUPERFAMILY Protein kinase-like (PK-like) 9 297 IPR011009 -
Cpe02g00013 301 PANTHER CELL DIVISION PROTEIN KINASE 7 299 - -
Cpe02g00013 301 Gene3D Transferase(Phosphotransferase) domain 1 102 300 - -
Cpe02g00013 301 Pfam Protein kinase domain 14 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g00013 301 ProSiteProfiles Protein kinase domain profile. 14 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g00013 301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Cpe02g00013 301 SMART serkin_6 14 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g00013 301 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Cpe02g00013 301 Gene3D Phosphorylase Kinase; domain 1 9 100 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00013 Cpe-Chr2:91371 Cpe09g00381 Cpe-Chr9:2301648 2.72E-18 dispersed
Cpe02g00013 Cpe-Chr2:91371 Cpe19g00180 Cpe-Chr19:1450012 3.60E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62195 PF00069 Pkinase 7.80E-64 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00013 K07760 - csv:101208001 586.26