Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00014 ATGACGGGATCTGAGACCGGAGTGATGACCAGCGGCGAACCCTTCACCATCGGTTTCCAGAAGAGTCCAGTACAGTCACAACAGTCGGTCTTGCCTGGCTTGCATTTGCCCTTCGGCGCCGACGCCGTCTACAAGCCCGCCTCCTCCGTCTCGCCCACCTACCAGTCCCCCGGCGTCGGTGTTTCCGGTAATGCCGGTGCCGATGTTTCTCCTCGTGAAGCTTTCGTTGACATGAATACGCAAAGCGCGCCTGTCAAGAGGAAGAGAGGGAGGCCTAGGAAGTATGGGCCAGATGGCAGTATGGCAGTGACTTCTGCAGACCCGTCCGCCGCCGCAACTCAGTCCGGTGGAGGTTTTTCTCCTCCTACCACTGGCGTGACTCCCTCGGGAGGATCAGCCTCTCCAACTTTGAAGAAAGCCAGAGGCAGACCCCCTGGCTCTGGCAAAAAGCAGCAGCTGGATGCCTTGGGATCAGCCGGAGTTGGATTTACCCCACATGTCATCACCGTGAAAGCTGGAGAGGTGGTGGTGGGGAGCTTTGTGAACGATGGGGGGCAGAAGGAGTTGAAACAAGCAAACCAAATAGAACAGCGGCCTGTTACTGCACCACATAAACTCGCTCCGATCCGTGCTGGAATGACAGGGGCGAGCAGTCCGCAATCACGTGGGGCTCTCAGTGAATCCTCAGGAGGGCAAGGGAGTCCGTTTAATCAGAGTGGTGGAGCCTGCAATAATACCGCATCTTGGAAGTGA 753 57.24 MTGSETGVMTSGEPFTIGFQKSPVQSQQSVLPGLHLPFGADAVYKPASSVSPTYQSPGVGVSGNAGADVSPREAFVDMNTQSAPVKRKRGRPRKYGPDGSMAVTSADPSAAATQSGGGFSPPTTGVTPSGGSASPTLKKARGRPPGSGKKQQLDALGSAGVGFTPHVITVKAGEVVVGSFVNDGGQKELKQANQIEQRPVTAPHKLAPIRAGMTGASSPQSRGALSESSGGQGSPFNQSGGACNNTASWK 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 94801 98732 + Cp4.1LG02g08710.1 Cpe02g00014 463963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00014 250 MobiDBLite consensus disorder prediction 106 134 - -
Cpe02g00014 250 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 15 176 - -
Cpe02g00014 250 SMART AT_hook_2 138 150 IPR017956 GO:0003677
Cpe02g00014 250 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Cpe02g00014 250 MobiDBLite consensus disorder prediction 72 153 - -
Cpe02g00014 250 MobiDBLite consensus disorder prediction 47 66 - -
Cpe02g00014 250 MobiDBLite consensus disorder prediction 214 250 - -
Cpe02g00014 250 MobiDBLite consensus disorder prediction 1 27 - -
Cpe02g00014 250 MobiDBLite consensus disorder prediction 211 250 - -
Cpe02g00014 250 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 15 176 IPR039605 GO:0003680
Cpe02g00014 250 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 175 246 - -
Cpe02g00014 250 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 175 246 IPR039605 GO:0003680
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00014 - - - csv:101207513 235.728
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00014 Cpe07g00602 CCT
Cpe02g00014 Cpe11g00774 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00014 Cpe-Chr2:94801 Cpe14g00956 Cpe-Chr14:8067717 4.95E-24 dispersed
Cpe12g00363 Cpe-Chr12:2579477 Cpe02g00014 Cpe-Chr2:94801 2.42E-13 dispersed
Cpe11g00774 Cpe-Chr11:6264454 Cpe02g00014 Cpe-Chr2:94801 1.24E-53 wgd
Cpe02g00014 Cpe-Chr2:94801 Cpe06g00002 Cpe-Chr6:8625 7.93E-60 wgd
Cpe02g00014 Cpe-Chr2:94801 Cpe07g00602 Cpe-Chr7:4043733 2.00E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g47 . . . . . . . . Cmo05g00982 Cmo12g00629 Cma01g02039 . Car01g01608 . . . Cpe07g00602 Bhi04g01204 . . . Hepe08g1523 . . Cla08g00927 Cam08g1372 Cec08g0955 Cco08g1074 Clacu08g1080 . Cre08g0864 . . Cone17ag1478 . Lsi04g02421 Csa04g02738 . Cme03g01327 Blo17g00908 . . . . . . . . Cmo01g02098 . Cma12g00694 Cma05g00961 Car05g00844 . Cpe11g00774 Cpe02g00014 Bhi09g02829 . . . . Mch11g0030 . Cla11g01851 Cam11g1917 Cec11g1942 Cco11g1956 Clacu11g2082 Cmu11g1886 Cre11g2294 Lsi08g00770 . Chy07g00425 Cme07g00024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002543 0 3 1 0 0 1 3 1 1 2 2 2 3 2 2 3 1 1 3 2 2 2 2 2 2 2 2 5 3 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00014 Cpe_Chr02 FPKM 19.326002 18.821712 17.019196 18.260614 16.160603 15.231212 15.658216 20.573147 17.664623 16.912256