Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00022 ATGCGTCCTTTTAGGTACCTCGCCGATGCCAACTCCTCCTCCATCTCCGACACGGTGGAGCCCGAGAGGTATGACTCCGACTTCGTCATAATCCTCGCCGCTCTTCTCTGCGCCTTGATATGCGTTCTTGGTCTCGTTGCTGTCGCTCGATGCGCCTGGCTACGCCACCTCGCTGGCGATAGAGGCGGCGCTGCTTCCACTCGTCCTCCTCCGCCTCCTGCCTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCCAAGTACACCTTCACCGCGGAGTTTGCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGTTGTCGGTGATGAAATCCGCGTTCTGCCGCAGTGTGGCCATGGATTTCACGTGTCCTGCATCGATACGTGGTTCCGATCTCACTCCTCCTGTCCTTCATGCCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCTGCGAGCTCGAGTTCGAACGGTGGGACTGAATCCAGAGTAAAAGATGAAGGAGAAGATAAGAGGAATAGGTTCTTACCTTAG 561 55.61 MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDRGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLPQCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKDEGEDKRNRFLP 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 122794 123354 - Cp4.1LG02g08490.1 Cpe02g00022 463971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00022 186 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Cpe02g00022 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 149 IPR013083 -
Cpe02g00022 186 PANTHER RING-H2 FINGER PROTEIN ATL8 2 178 - -
Cpe02g00022 186 SMART ring_2 103 144 IPR001841 -
Cpe02g00022 186 MobiDBLite consensus disorder prediction 160 186 - -
Cpe02g00022 186 CDD RING-H2_PA-TM-RING 102 145 - -
Cpe02g00022 186 SUPERFAMILY RING/U-box 83 151 - -
Cpe02g00022 186 Pfam Ring finger domain 102 145 IPR001841 -
Cpe02g00022 186 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 2 178 - -
Cpe02g00022 186 MobiDBLite consensus disorder prediction 171 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00022 Cpe-Chr2:122794 Cpe13g01038 Cpe-Chr13:8513435 3.58E-42 dispersed
Cpe02g00022 Cpe-Chr2:122794 Cpe06g00008 Cpe-Chr6:29388 7.69E-125 wgd
Cpe02g00022 Cpe-Chr2:122794 Cpe08g01279 Cpe-Chr8:9244373 5.10E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00022 - - csv:101207021 335.109