Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00029 ATGGATCAGTTCGACGCATTCTTCAGGAGAGCCGATTTGGATGGTGATGGAAGGATTAGTGGAGCTGAAGCTGTCGCTTTCTTTCAGGGCTCCAATTTGCCTAAAAATGTTCTTGCACAGATATGGATGCATGCTGATCAGAGAAAAACAGGTTTTCTTGGGCGACCCGAATTTTATAATGCTCTCAGACTCGTAACTGTTGCTCAAAGTAAGCGAGAGCTAACTCCGGATATTGTTAAGGCAGCACTATATGGTCCTGCTGCAGCGAAAATACCCCCACCAAAGATTGTTCTTCCAGCTGTATCTACCCCTCAATCAACTTCAGTGCCTGCTGCATCTCCCCCACAGATGAGTATGCCTGCACCAACGGCATCTCAAAATTTTGGCTTTAGAGGACAAGGAGTTCCAAGTGTAGGTGTGAATCAGCAGCATATTTCAGCCCAGCCAAACCCTTCCATGAGGTTACCTCAAGCTACACCTGGTGGTGTTGCTTCCAGTACGCAGCTGGTTGTTGCTGCTGCTGAACACTCTGGAGGAGGACACGTACGGAGTTCAAGTCTTCCAAACACAAATGATTGGCTTGGTGGAAGACCAGGTGGTGCCCTTGCTGCTGGGCCTAGAGGAGTTAGCCCTTCAGTGCCTTCCCCAGCTACGTCGTTATCATCAGCTTTAGTGCCTTCTCAGCCTATGCCTAATGATAGAGCACCGGCTGTTTCTGGTAATGGATTTACTTCTAAGTCGGCAATTGGTGCTGACATGTTTTCTATTACTCCATCTCCACATAGACCAGATTCTACCGGACTCAACAATACAGCTAACAGTAGTATTGGCCCATCAGCCATTGTTCCAGTTTCCAGTGTATCGCAACCTTTAAGTCAGCACAAATCGATGGAGTCATTGCAGAGTGCCTTTGTCTCACGGCCATTATCTGGCGCACCGTTACAGCTCTCTCAGTCACCCTTACAGCTCGCTCAGTCACCCTTACAGCTCTCTCAGTCATCACTGGAACCTACCAAGGAGGTTAGAGCAACAGGTCCATCACCACTTATATCTTCTGGGATCACAACTGGAGCCAGGAACTCGACTGCTGAAAATGCACAGGTTTCTTGGCCAAAGATGAAACCAACTGATGTTCAGAAGTACACAAAAGTTTTTATGGAAGTAGACACTGACAGAGACGGTAGAATTACCGAGGTCTTGAAGCAGGTGTGGGACTTATCTGATCAAGACAATGACAGCATGCTTTCTCTCAGAGAGTTTTGTTTTGCTTTATATCTAATGGAACGTTACAGGGAAGGTCGACCTCTTCCAGCTGCACTTCCAAATAATGTTATGTTTGATGAGACTCTGTTGTCCATGACAGGACAACCTAACGTTGTCCACCCAAATGCAGCTTGGGGTCCCCATCCTGGATTTGGACAGCAGCAACCCCAGGTCGCTGCTCAGTCGATGGCACCAACTGCAGGATTGAGGCCCCCAACAAATGTACCTGCTTCGAAGGCTGGTGTTGCTAGACTATCCAATGCGCAGAAATCAAGGACTCCAGTTGGAGAGACAGATAATGTTATTTTGGATTCAAGAGAAAAGATTGAATTCTATCGCACAATGATGCAGGAACTTGTTCTGCATAAAAGCAGATGTGATAACAGATTAAATGAGATCACAGAAAGGGCATCTGCTGACAGGCGTGAGGCAGAAACTTTGGGGAAAAAATATGAGGAGAAGTACAAGCAAGTGGCTGACATAGCATCTAAGTTAACCATTGAAGAAGCAAATTATCGTGATGTTCAAGAAAGGAAGACAGAGCTACATGAAGCAATTATTAAAATGGAACAAGGAGGAAGTGCTGATGGTATTCTTCAGGTCCGAGCTGATCGAATACAATCTGATATTGAGTTGCTTCTTAAGGCTTTAACTGAACGTTGTAAGAGACATGGAATTGATGTTAAGTCGGCAGCTATGATTGAACTTCCAGTAGGCTGGCAACCTGGAATTGCGGATGATGCAACTGTTTGGGATGAAGAGTGGGATAAATTTGAAGATGAAGGATTTTCCAATGATCTCAATCTCGATCCAAAACGTGTTTCTGCCTCAAAACCAAAAATGTCAGATGGTCTGGATGAAAAGGATCTAGAAGATTATAACTCAACTCTTGATTCATCGTTCAATGGCAATGACAAGACCAAAGCGGGGATCTTCTCGAGTACCATCAATCATGGCCTTGAGAGTGAATTTATGTATAGCCACAGTGAAGATGAATCAGCTAGAAGTCCATATGGCAGTCCAGCTGCAAAGACATCTCTAGAAAGCCCTCGTGAATTTTCAGATGCTGTTTATGAAAAAAGTCCTGAAGCATATAGAAGTTTCGATGAGTCAGCTTGGGGCGCCTTTGACAACAATGACGATGTGGACTCAGTTTGGGGAATAAAACCAGTTAATACCAAGGAATCAGACGCTGAAAAGCACCGAGATATCTTTGGATCCGGTGATTTCGATACGAGCTCTGCTAAAACCGCATCCCCCAATGCAGATAGCTTCTTTCAGACAAAAAGCCCATTTTTTGAGGATTCTGTTCCTCCCACTCCTCTCTCTAGATTCGGCAACTCCTCTTCCCCTCGTTATAGTGATGTGGGGGATCACTTCTTTGACAATTCCTCCAGGTTTGATTCTTTCAGCGTGCAGGATCCCAGTTTTTCTCCACAACGCGAGAAGTTCTCCAGGTTCGATTCAATAGGCAGTTCTCAAGACTTTGGCCGTAGCCAGGAGAAGTTTTCAAGGTTTGATTCTATCAGTAGTAGCATGGACTTCGGCCAGAGCAGCCAGCGGCACGCCAGGTTTGACTCCGCTGGCAGCTCTAGAGATTTCAGCCACAGTGCCTTCTCTTTTGATGATGCTGACCCATTTGGGTCCTCTGCCCCGTTTAAAGCCCCATCAGAGAATCAAAGTCCCAACAAAAGTTCTGATTCTTGGAGAGCTTTCTAA 2982 45.61 MDQFDAFFRRADLDGDGRISGAEAVAFFQGSNLPKNVLAQIWMHADQRKTGFLGRPEFYNALRLVTVAQSKRELTPDIVKAALYGPAAAKIPPPKIVLPAVSTPQSTSVPAASPPQMSMPAPTASQNFGFRGQGVPSVGVNQQHISAQPNPSMRLPQATPGGVASSTQLVVAAAEHSGGGHVRSSSLPNTNDWLGGRPGGALAAGPRGVSPSVPSPATSLSSALVPSQPMPNDRAPAVSGNGFTSKSAIGADMFSITPSPHRPDSTGLNNTANSSIGPSAIVPVSSVSQPLSQHKSMESLQSAFVSRPLSGAPLQLSQSPLQLAQSPLQLSQSSLEPTKEVRATGPSPLISSGITTGARNSTAENAQVSWPKMKPTDVQKYTKVFMEVDTDRDGRITEVLKQVWDLSDQDNDSMLSLREFCFALYLMERYREGRPLPAALPNNVMFDETLLSMTGQPNVVHPNAAWGPHPGFGQQQPQVAAQSMAPTAGLRPPTNVPASKAGVARLSNAQKSRTPVGETDNVILDSREKIEFYRTMMQELVLHKSRCDNRLNEITERASADRREAETLGKKYEEKYKQVADIASKLTIEEANYRDVQERKTELHEAIIKMEQGGSADGILQVRADRIQSDIELLLKALTERCKRHGIDVKSAAMIELPVGWQPGIADDATVWDEEWDKFEDEGFSNDLNLDPKRVSASKPKMSDGLDEKDLEDYNSTLDSSFNGNDKTKAGIFSSTINHGLESEFMYSHSEDESARSPYGSPAAKTSLESPREFSDAVYEKSPEAYRSFDESAWGAFDNNDDVDSVWGIKPVNTKESDAEKHRDIFGSGDFDTSSAKTASPNADSFFQTKSPFFEDSVPPTPLSRFGNSSSPRYSDVGDHFFDNSSRFDSFSVQDPSFSPQREKFSRFDSIGSSQDFGRSQEKFSRFDSISSSMDFGQSSQRHARFDSAGSSRDFSHSAFSFDDADPFGSSAPFKAPSENQSPNKSSDSWRAF 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 149020 157012 - Cp4.1LG02g08290.1 Cpe02g00029 463978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00029 993 Gene3D - 1 96 - -
Cpe02g00029 993 MobiDBLite consensus disorder prediction 974 993 - -
Cpe02g00029 993 ProSiteProfiles EH domain profile. 398 445 IPR000261 GO:0005515
Cpe02g00029 993 SMART efh_1 3 31 IPR002048 GO:0005509
Cpe02g00029 993 SMART efh_1 37 65 IPR002048 GO:0005509
Cpe02g00029 993 SMART efh_1 399 427 IPR002048 GO:0005509
Cpe02g00029 993 MobiDBLite consensus disorder prediction 970 993 - -
Cpe02g00029 993 SUPERFAMILY EF-hand 2 83 IPR011992 -
Cpe02g00029 993 SMART eh_3 2 88 IPR000261 GO:0005515
Cpe02g00029 993 SMART eh_3 370 450 IPR000261 GO:0005515
Cpe02g00029 993 MobiDBLite consensus disorder prediction 212 228 - -
Cpe02g00029 993 MobiDBLite consensus disorder prediction 892 954 - -
Cpe02g00029 993 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1 517 - -
Cpe02g00029 993 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 516 919 - -
Cpe02g00029 993 ProSiteProfiles EH domain profile. 1 90 IPR000261 GO:0005515
Cpe02g00029 993 ProSiteProfiles EF-hand calcium-binding domain profile. 395 430 IPR002048 GO:0005509
Cpe02g00029 993 PANTHER EH DOMAIN 922 993 - -
Cpe02g00029 993 PANTHER EH DOMAIN 1 517 - -
Cpe02g00029 993 Gene3D - 372 445 - -
Cpe02g00029 993 MobiDBLite consensus disorder prediction 348 365 - -
Cpe02g00029 993 MobiDBLite consensus disorder prediction 253 273 - -
Cpe02g00029 993 CDD EH 4 70 IPR000261 GO:0005515
Cpe02g00029 993 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 922 993 - -
Cpe02g00029 993 MobiDBLite consensus disorder prediction 259 273 - -
Cpe02g00029 993 SUPERFAMILY EF-hand 366 445 IPR011992 -
Cpe02g00029 993 PANTHER EH DOMAIN 516 919 - -
Cpe02g00029 993 MobiDBLite consensus disorder prediction 689 710 - -
Cpe02g00029 993 ProSiteProfiles EF-hand calcium-binding domain profile. 1 34 IPR002048 GO:0005509
Cpe02g00029 993 MobiDBLite consensus disorder prediction 818 842 - -
Cpe02g00029 993 MobiDBLite consensus disorder prediction 332 365 - -
Cpe02g00029 993 Pfam EF hand 383 397 IPR002048 GO:0005509
Cpe02g00029 993 Pfam EF hand 5 21 IPR002048 GO:0005509
Cpe02g00029 993 MobiDBLite consensus disorder prediction 177 235 - -
Cpe02g00029 993 MobiDBLite consensus disorder prediction 748 773 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00029 K12472 EPS15; epidermal growth factor receptor substrate 15 - csv:101204624 1533.08
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00029 Cpe06g00014 CCT
Cpe02g00029 Cpe06g00014 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00029 Cpe-Chr2:149020 Cpe14g00735 Cpe-Chr14:5493342 1.32E-14 dispersed
Cpe15g00643 Cpe-Chr15:7137748 Cpe02g00029 Cpe-Chr2:149020 2.72E-38 wgd
Cpe02g00029 Cpe-Chr2:149020 Cpe04g00633 Cpe-Chr4:6545891 1.59E-32 wgd
Cpe02g00029 Cpe-Chr2:149020 Cpe06g00014 Cpe-Chr6:53576 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g78 . . . . . . . . . . Cma01g02025 Cma09g00044 Car01g01591 . . Cpe06g00014 . . . . . . . . . . . . . . . . . Cone17ag1459 Cone20ag0016 Lsi04g01819 Csa04g02715 . . . . . . . . . . . . Cmo09g00045 . . . Car09g00036 . Cpe02g00029 Bhi09g02853 Tan01g5126 Cmetu07g1818 . Hepe01g2350 Mch11g0047 . Cla11g01832 Cam11g1899 Cec11g1925 Cco11g1934 Clacu11g2063 Cmu11g1868 Cre11g2276 . . Chy07g00404 Cme07g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005327 2 2 2 4 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 0 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00029 Cpe_Chr02 FPKM 31.810606 25.722191 27.154449 26.83326 24.12141 24.34992 26.308294 15.945504 15.168858 19.78809