Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00030 ATGAAAGGCGGTAAATCGAAGACGGAGTCGATGAAACCACACGCCAAGCTTGCGGTGAAGAAAGGTGCAGCCAAGAAAGGGAGTAAGAAGGCAGGAAAAGATCCTAACAAACCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTCATGGAAGAGTTCAGAAAGAAGTTCAGCGAGGAGAATCCGAATAACAAAGCAGTATCTGCTGTTGGCAAAGCTGCAGGACACAAATGGAAGTCGATGTCTGATGCTGAAAAAGCACCTTACGCTGCTAAGGCCGACAAGAGGAAGGTTGAATATGAGAAAAACATGAAGGCCTATAACAAGAAACAGGCTAGTGGAGCCAATGCTGCAGAGGGAGATGAGTCTGAGAAGTCAACGCCCGAGGTGAATGGTGACGATGAGGCAGGAGACGATGATGGCAGCGAGGAGATGGCAAGAACAGAAGATGATGAGGATGAAGATGTCGTTCCTAACACCAACAGAATTGAGTCCAGTGGTATTGGTGCGTGGAACACACGCGCTGTAGCAGCTAGTAGTGGAGGGTTTGTGGTAAAGGGACATTGCCGTCGTGGCAAAGCAAAGAAAAGATACAGACAAGCCAAGATAAGCAGAAGACCCGCCGCGACCTCCGCAATTAGCGGTAGAGTGCGGGTCCGACGTGGCATGTTCCGCAACAGCACAAAGAACCAAGAAAGTGCAGAAAAGAGGAGGATGGAGTGGGCGAACCAGCAGCAACAGAACAACCAAACTGAGCAGCAATTGCAAGTGCAAATGCAGGTAGAGCAATTGAGCAACGGCGATGGAGTTGGTGGGCTGTACGTCAAGGTAATGACGGATGAGCAAATGGAGCTCCTCAGGCACCAGATCTCTGTCTATGCTTCCATATGTGAGCAGCTCGTGGAGATGCACAAGGCTATCACCGCCCACCAGGACCTTGCCGGAATTAGGGTAGGGAACCTATACTGCGATCAAATAATGGCATCTGCCGCTGGTCACAAGATAAGTTCTAGGCAGAGGTGGACGCCCACGCCTGTGCAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAATGGGACCCCAAGCAAGCAGAAGATCAAGGAAATAACTCTCCACCTCACACAGCATGGCCAAATTTCAGAAGCAAATGTTTACAATTGGTTTCAGAACAGAAGGGCTCGCTCAAAAAGAAAGCAGGCAAATTCAACACCAAATAATCCAGACTCGGAACCAGACACAGAAGTTGATTCTCCAAAGGACAAAAAGACCAAACCAGAAACCTTCCAAACATATGACCAATTCGTTTCCAATTCCAACAACGTGTATTCTCAGACATCTGATTTAGGCGCTGAAATGCTCGCCTTTGATGCACAATCAAACAAAGGGGACCCCATGCTCCAGTCTTTCGGATCGAGTCATTTGAGTCAGGTCGCCACCGCACAGAATCACAGAAATAATGATAAGATGAACGTACCAGACGGCTACACCCCTTACCATCCTTGTGAAGGATATCCACTTGGTTGA 1524 48.62 MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNKAVSAVGKAAGHKWKSMSDAEKAPYAAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEKSTPEVNGDDEAGDDDGSEEMARTEDDEDEDVVPNTNRIESSGIGAWNTRAVAASSGGFVVKGHCRRGKAKKRYRQAKISRRPAATSAISGRVRVRRGMFRNSTKNQESAEKRRMEWANQQQQNNQTEQQLQVQMQVEQLSNGDGVGGLYVKVMTDEQMELLRHQISVYASICEQLVEMHKAITAHQDLAGIRVGNLYCDQIMASAAGHKISSRQRWTPTPVQLQILEQIFDEGNGTPSKQKIKEITLHLTQHGQISEANVYNWFQNRRARSKRKQANSTPNNPDSEPDTEVDSPKDKKTKPETFQTYDQFVSNSNNVYSQTSDLGAEMLAFDAQSNKGDPMLQSFGSSHLSQVATAQNHRNNDKMNVPDGYTPYHPCEGYPLG 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 157492 161929 - Cp4.1LG02g08320.1 Cpe02g00030 463979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00030 507 PANTHER WUSCHEL-RELATED HOMEOBOX 13 238 473 IPR044559 GO:0003700
Cpe02g00030 507 Coils Coil 89 109 - -
Cpe02g00030 507 MobiDBLite consensus disorder prediction 475 489 - -
Cpe02g00030 507 MobiDBLite consensus disorder prediction 1 42 - -
Cpe02g00030 507 SMART HOX_1 335 402 IPR001356 GO:0003677
Cpe02g00030 507 PANTHER - 238 473 - -
Cpe02g00030 507 MobiDBLite consensus disorder prediction 1 16 - -
Cpe02g00030 507 ProSiteProfiles 'Homeobox' domain profile. 333 398 IPR001356 GO:0003677
Cpe02g00030 507 Gene3D - 339 404 - -
Cpe02g00030 507 MobiDBLite consensus disorder prediction 132 156 - -
Cpe02g00030 507 MobiDBLite consensus disorder prediction 475 507 - -
Cpe02g00030 507 CDD homeodomain 337 399 IPR001356 GO:0003677
Cpe02g00030 507 CDD HMGB-UBF_HMG-box 38 104 - -
Cpe02g00030 507 SMART hmgende2 37 108 IPR009071 -
Cpe02g00030 507 MobiDBLite consensus disorder prediction 56 164 - -
Cpe02g00030 507 Gene3D High mobility group box domain 22 121 IPR036910 -
Cpe02g00030 507 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 38 107 IPR009071 -
Cpe02g00030 507 MobiDBLite consensus disorder prediction 392 425 - -
Cpe02g00030 507 SUPERFAMILY HMG-box 24 111 IPR036910 -
Cpe02g00030 507 SUPERFAMILY Homeodomain-like 336 399 IPR009057 -
Cpe02g00030 507 Pfam Homeodomain 337 397 IPR001356 GO:0003677
Cpe02g00030 507 MobiDBLite consensus disorder prediction 77 105 - -
Cpe02g00030 507 Pfam HMG (high mobility group) box 38 107 IPR009071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00030 - - - bhj:120085747 434.491
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00030 Cpe06g00017 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00030 Cpe-Chr2:157492 Cpe06g00019 Cpe-Chr6:86182 2.15E-50 dispersed
Cpe10g00098 Cpe-Chr10:663030 Cpe02g00030 Cpe-Chr2:157492 2.60E-12 dispersed
Cpe05g01440 Cpe-Chr5:10048037 Cpe02g00030 Cpe-Chr2:157492 4.60E-16 transposed
Cpe14g01056 Cpe-Chr14:8820899 Cpe02g00030 Cpe-Chr2:157492 9.71E-94 wgd
Cpe02g00030 Cpe-Chr2:157492 Cpe06g00017 Cpe-Chr6:80276 2.05E-149 wgd
Cpe02g00030 Cpe-Chr2:157492 Cpe08g01288 Cpe-Chr8:9296829 3.30E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g82 Blo01g01638 . . Bda03g00324 Bpe02g00305 . Bma04g00291 Bma01g02412 . . Cma01g02023 Cma09g00047 Car01g01590 . . Cpe06g00017 . . . . . . . . . . . . . . . . . . . Lsi04g01814 Csa04g02711 . . . . Bda11g00976 . . . . . Sed01g2425 Cmo01g02079 Cmo09g00049 . . . Car09g00039 . Cpe02g00030 Bhi09g02871 Tan01g5120 Cmetu07g0405 . Hepe01g2347 Mch11g0050 . Cla11g01830 Cam11g1897 Cec11g1922 Cco11g1932 Clacu11g2061 Cmu11g1866 Cre11g2274 . . Chy07g00400 Cme07g00048
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe09g01115 CCT,ECH 3 180 Wox Gene Family AT3G18010 56.9 8.0e-48 188.3
Cpe20g00149 CCT,CST,ECH 1 191 Wox Gene Family AT3G18010 55.4 4.4e-46 182.6
Cpe04g01371 CCT,CST,ECH 1 165 Wox Gene Family AT3G18010 53.8 2.1e-40 163.7
Cpe14g01056 . 1 274 Wox Gene Family AT4G35550 51.9 6.1e-72 268.1
Cpe06g00017 CCT 1 191 Wox Gene Family AT4G35550 61.0 2.7e-56 216.1
Cpe02g00030 CCT 238 399 Wox Gene Family AT4G35550 66.9 3.3e-54 209.1
Cpe02g00030 CCT 275 406 Wox Gene Family AT1G20700 58.5 6.7e-39 157.9
Cpe07g00494 CCT 5 138 Wox Gene Family AT1G46480 62.2 5.5e-43 171.4
Cpe19g01046 CCT 1 384 Wox Gene Family AT2G33880 50.7 3.4e-68 256.1
Cpe09g01115 CCT,ECH 3 180 Wox Gene Family AT3G18010 56.9 8.0e-48 188.3
Cpe20g00149 CCT,CST,ECH 1 191 Wox Gene Family AT3G18010 55.4 4.4e-46 182.6
Cpe04g01371 CCT,CST,ECH 1 165 Wox Gene Family AT3G18010 53.8 2.1e-40 163.7
Cpe07g00494 CCT 5 138 Wox Gene Family AT1G46480 62.2 5.5e-43 171.4
Cpe19g01046 CCT 1 384 Wox Gene Family AT2G33880 50.7 3.4e-68 256.1
Cpe14g01056 . 1 274 Wox Gene Family AT4G35550 51.9 6.1e-72 268.1
Cpe06g00017 CCT 1 191 Wox Gene Family AT4G35550 61.0 2.7e-56 216.1
Cpe02g00030 CCT 238 399 Wox Gene Family AT4G35550 66.9 3.3e-54 209.1
Cpe02g00030 CCT 275 406 Wox Gene Family AT1G20700 58.5 6.7e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48967 PF00505 HMG_box 6.90E-22 CL0114 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00030 Cpe_Chr02 FPKM 8.254161 9.479006 7.997709 8.411184 6.76015 7.426424 7.880588 10.973057 11.846906 13.06341