Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00030 ATGAAAGGCGGTAAATCGAAGACGGAGTCGATGAAACCACACGCCAAGCTTGCGGTGAAGAAAGGTGCAGCCAAGAAAGGGAGTAAGAAGGCAGGAAAAGATCCTAACAAACCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTCATGGAAGAGTTCAGAAAGAAGTTCAGCGAGGAGAATCCGAATAACAAAGCAGTATCTGCTGTTGGCAAAGCTGCAGGACACAAATGGAAGTCGATGTCTGATGCTGAAAAAGCACCTTACGCTGCTAAGGCCGACAAGAGGAAGGTTGAATATGAGAAAAACATGAAGGCCTATAACAAGAAACAGGCTAGTGGAGCCAATGCTGCAGAGGGAGATGAGTCTGAGAAGTCAACGCCCGAGGTGAATGGTGACGATGAGGCAGGAGACGATGATGGCAGCGAGGAGATGGCAAGAACAGAAGATGATGAGGATGAAGATGTCGTTCCTAACACCAACAGAATTGAGTCCAGTGGTATTGGTGCGTGGAACACACGCGCTGTAGCAGCTAGTAGTGGAGGGTTTGTGGTAAAGGGACATTGCCGTCGTGGCAAAGCAAAGAAAAGATACAGACAAGCCAAGATAAGCAGAAGACCCGCCGCGACCTCCGCAATTAGCGGTAGAGTGCGGGTCCGACGTGGCATGTTCCGCAACAGCACAAAGAACCAAGAAAGTGCAGAAAAGAGGAGGATGGAGTGGGCGAACCAGCAGCAACAGAACAACCAAACTGAGCAGCAATTGCAAGTGCAAATGCAGGTAGAGCAATTGAGCAACGGCGATGGAGTTGGTGGGCTGTACGTCAAGGTAATGACGGATGAGCAAATGGAGCTCCTCAGGCACCAGATCTCTGTCTATGCTTCCATATGTGAGCAGCTCGTGGAGATGCACAAGGCTATCACCGCCCACCAGGACCTTGCCGGAATTAGGGTAGGGAACCTATACTGCGATCAAATAATGGCATCTGCCGCTGGTCACAAGATAAGTTCTAGGCAGAGGTGGACGCCCACGCCTGTGCAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAATGGGACCCCAAGCAAGCAGAAGATCAAGGAAATAACTCTCCACCTCACACAGCATGGCCAAATTTCAGAAGCAAATGTTTACAATTGGTTTCAGAACAGAAGGGCTCGCTCAAAAAGAAAGCAGGCAAATTCAACACCAAATAATCCAGACTCGGAACCAGACACAGAAGTTGATTCTCCAAAGGACAAAAAGACCAAACCAGAAACCTTCCAAACATATGACCAATTCGTTTCCAATTCCAACAACGTGTATTCTCAGACATCTGATTTAGGCGCTGAAATGCTCGCCTTTGATGCACAATCAAACAAAGGGGACCCCATGCTCCAGTCTTTCGGATCGAGTCATTTGAGTCAGGTCGCCACCGCACAGAATCACAGAAATAATGATAAGATGAACGTACCAGACGGCTACACCCCTTACCATCCTTGTGAAGGATATCCACTTGGTTGA 1524 48.62 MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNKAVSAVGKAAGHKWKSMSDAEKAPYAAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEKSTPEVNGDDEAGDDDGSEEMARTEDDEDEDVVPNTNRIESSGIGAWNTRAVAASSGGFVVKGHCRRGKAKKRYRQAKISRRPAATSAISGRVRVRRGMFRNSTKNQESAEKRRMEWANQQQQNNQTEQQLQVQMQVEQLSNGDGVGGLYVKVMTDEQMELLRHQISVYASICEQLVEMHKAITAHQDLAGIRVGNLYCDQIMASAAGHKISSRQRWTPTPVQLQILEQIFDEGNGTPSKQKIKEITLHLTQHGQISEANVYNWFQNRRARSKRKQANSTPNNPDSEPDTEVDSPKDKKTKPETFQTYDQFVSNSNNVYSQTSDLGAEMLAFDAQSNKGDPMLQSFGSSHLSQVATAQNHRNNDKMNVPDGYTPYHPCEGYPLG 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 157492 161929 - Cp4.1LG02g08320.1 Cpe02g00030 463979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00030 507 PANTHER WUSCHEL-RELATED HOMEOBOX 13 238 473 IPR044559 GO:0003700
Cpe02g00030 507 Coils Coil 89 109 - -
Cpe02g00030 507 MobiDBLite consensus disorder prediction 475 489 - -
Cpe02g00030 507 MobiDBLite consensus disorder prediction 1 42 - -
Cpe02g00030 507 SMART HOX_1 335 402 IPR001356 GO:0003677
Cpe02g00030 507 PANTHER - 238 473 - -
Cpe02g00030 507 MobiDBLite consensus disorder prediction 1 16 - -
Cpe02g00030 507 ProSiteProfiles 'Homeobox' domain profile. 333 398 IPR001356 GO:0003677
Cpe02g00030 507 Gene3D - 339 404 - -
Cpe02g00030 507 MobiDBLite consensus disorder prediction 132 156 - -
Cpe02g00030 507 MobiDBLite consensus disorder prediction 475 507 - -
Cpe02g00030 507 CDD homeodomain 337 399 IPR001356 GO:0003677
Cpe02g00030 507 CDD HMGB-UBF_HMG-box 38 104 - -
Cpe02g00030 507 SMART hmgende2 37 108 IPR009071 -
Cpe02g00030 507 MobiDBLite consensus disorder prediction 56 164 - -
Cpe02g00030 507 Gene3D High mobility group box domain 22 121 IPR036910 -
Cpe02g00030 507 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 38 107 IPR009071 -
Cpe02g00030 507 MobiDBLite consensus disorder prediction 392 425 - -
Cpe02g00030 507 SUPERFAMILY HMG-box 24 111 IPR036910 -
Cpe02g00030 507 SUPERFAMILY Homeodomain-like 336 399 IPR009057 -
Cpe02g00030 507 Pfam Homeodomain 337 397 IPR001356 GO:0003677
Cpe02g00030 507 MobiDBLite consensus disorder prediction 77 105 - -
Cpe02g00030 507 Pfam HMG (high mobility group) box 38 107 IPR009071 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00030 Cpe06g00017 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00030 Cpe-Chr2:157492 Cpe06g00019 Cpe-Chr6:86182 2.15E-50 dispersed
Cpe10g00098 Cpe-Chr10:663030 Cpe02g00030 Cpe-Chr2:157492 2.60E-12 dispersed
Cpe05g01440 Cpe-Chr5:10048037 Cpe02g00030 Cpe-Chr2:157492 4.60E-16 transposed
Cpe14g01056 Cpe-Chr14:8820899 Cpe02g00030 Cpe-Chr2:157492 9.71E-94 wgd
Cpe02g00030 Cpe-Chr2:157492 Cpe06g00017 Cpe-Chr6:80276 2.05E-149 wgd
Cpe02g00030 Cpe-Chr2:157492 Cpe08g01288 Cpe-Chr8:9296829 3.30E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48967 PF00505 HMG_box 6.90E-22 CL0114 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00030 - - bhj:120085747 434.491