Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe02g00030 | ATGAAAGGCGGTAAATCGAAGACGGAGTCGATGAAACCACACGCCAAGCTTGCGGTGAAGAAAGGTGCAGCCAAGAAAGGGAGTAAGAAGGCAGGAAAAGATCCTAACAAACCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTCATGGAAGAGTTCAGAAAGAAGTTCAGCGAGGAGAATCCGAATAACAAAGCAGTATCTGCTGTTGGCAAAGCTGCAGGACACAAATGGAAGTCGATGTCTGATGCTGAAAAAGCACCTTACGCTGCTAAGGCCGACAAGAGGAAGGTTGAATATGAGAAAAACATGAAGGCCTATAACAAGAAACAGGCTAGTGGAGCCAATGCTGCAGAGGGAGATGAGTCTGAGAAGTCAACGCCCGAGGTGAATGGTGACGATGAGGCAGGAGACGATGATGGCAGCGAGGAGATGGCAAGAACAGAAGATGATGAGGATGAAGATGTCGTTCCTAACACCAACAGAATTGAGTCCAGTGGTATTGGTGCGTGGAACACACGCGCTGTAGCAGCTAGTAGTGGAGGGTTTGTGGTAAAGGGACATTGCCGTCGTGGCAAAGCAAAGAAAAGATACAGACAAGCCAAGATAAGCAGAAGACCCGCCGCGACCTCCGCAATTAGCGGTAGAGTGCGGGTCCGACGTGGCATGTTCCGCAACAGCACAAAGAACCAAGAAAGTGCAGAAAAGAGGAGGATGGAGTGGGCGAACCAGCAGCAACAGAACAACCAAACTGAGCAGCAATTGCAAGTGCAAATGCAGGTAGAGCAATTGAGCAACGGCGATGGAGTTGGTGGGCTGTACGTCAAGGTAATGACGGATGAGCAAATGGAGCTCCTCAGGCACCAGATCTCTGTCTATGCTTCCATATGTGAGCAGCTCGTGGAGATGCACAAGGCTATCACCGCCCACCAGGACCTTGCCGGAATTAGGGTAGGGAACCTATACTGCGATCAAATAATGGCATCTGCCGCTGGTCACAAGATAAGTTCTAGGCAGAGGTGGACGCCCACGCCTGTGCAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAATGGGACCCCAAGCAAGCAGAAGATCAAGGAAATAACTCTCCACCTCACACAGCATGGCCAAATTTCAGAAGCAAATGTTTACAATTGGTTTCAGAACAGAAGGGCTCGCTCAAAAAGAAAGCAGGCAAATTCAACACCAAATAATCCAGACTCGGAACCAGACACAGAAGTTGATTCTCCAAAGGACAAAAAGACCAAACCAGAAACCTTCCAAACATATGACCAATTCGTTTCCAATTCCAACAACGTGTATTCTCAGACATCTGATTTAGGCGCTGAAATGCTCGCCTTTGATGCACAATCAAACAAAGGGGACCCCATGCTCCAGTCTTTCGGATCGAGTCATTTGAGTCAGGTCGCCACCGCACAGAATCACAGAAATAATGATAAGATGAACGTACCAGACGGCTACACCCCTTACCATCCTTGTGAAGGATATCCACTTGGTTGA | 1524 | 48.62 | MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNKAVSAVGKAAGHKWKSMSDAEKAPYAAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEKSTPEVNGDDEAGDDDGSEEMARTEDDEDEDVVPNTNRIESSGIGAWNTRAVAASSGGFVVKGHCRRGKAKKRYRQAKISRRPAATSAISGRVRVRRGMFRNSTKNQESAEKRRMEWANQQQQNNQTEQQLQVQMQVEQLSNGDGVGGLYVKVMTDEQMELLRHQISVYASICEQLVEMHKAITAHQDLAGIRVGNLYCDQIMASAAGHKISSRQRWTPTPVQLQILEQIFDEGNGTPSKQKIKEITLHLTQHGQISEANVYNWFQNRRARSKRKQANSTPNNPDSEPDTEVDSPKDKKTKPETFQTYDQFVSNSNNVYSQTSDLGAEMLAFDAQSNKGDPMLQSFGSSHLSQVATAQNHRNNDKMNVPDGYTPYHPCEGYPLG | 507 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 157492 | 161929 | - | Cp4.1LG02g08320.1 | Cpe02g00030 | 463979 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe02g00030 | 507 | PANTHER | WUSCHEL-RELATED HOMEOBOX 13 | 238 | 473 | IPR044559 | GO:0003700 | |
Cpe02g00030 | 507 | Coils | Coil | 89 | 109 | - | - | |
Cpe02g00030 | 507 | MobiDBLite | consensus disorder prediction | 475 | 489 | - | - | |
Cpe02g00030 | 507 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Cpe02g00030 | 507 | SMART | HOX_1 | 335 | 402 | IPR001356 | GO:0003677 | |
Cpe02g00030 | 507 | PANTHER | - | 238 | 473 | - | - | |
Cpe02g00030 | 507 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Cpe02g00030 | 507 | ProSiteProfiles | 'Homeobox' domain profile. | 333 | 398 | IPR001356 | GO:0003677 | |
Cpe02g00030 | 507 | Gene3D | - | 339 | 404 | - | - | |
Cpe02g00030 | 507 | MobiDBLite | consensus disorder prediction | 132 | 156 | - | - | |
Cpe02g00030 | 507 | MobiDBLite | consensus disorder prediction | 475 | 507 | - | - | |
Cpe02g00030 | 507 | CDD | homeodomain | 337 | 399 | IPR001356 | GO:0003677 | |
Cpe02g00030 | 507 | CDD | HMGB-UBF_HMG-box | 38 | 104 | - | - | |
Cpe02g00030 | 507 | SMART | hmgende2 | 37 | 108 | IPR009071 | - | |
Cpe02g00030 | 507 | MobiDBLite | consensus disorder prediction | 56 | 164 | - | - | |
Cpe02g00030 | 507 | Gene3D | High mobility group box domain | 22 | 121 | IPR036910 | - | |
Cpe02g00030 | 507 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 38 | 107 | IPR009071 | - | |
Cpe02g00030 | 507 | MobiDBLite | consensus disorder prediction | 392 | 425 | - | - | |
Cpe02g00030 | 507 | SUPERFAMILY | HMG-box | 24 | 111 | IPR036910 | - | |
Cpe02g00030 | 507 | SUPERFAMILY | Homeodomain-like | 336 | 399 | IPR009057 | - | |
Cpe02g00030 | 507 | Pfam | Homeodomain | 337 | 397 | IPR001356 | GO:0003677 | |
Cpe02g00030 | 507 | MobiDBLite | consensus disorder prediction | 77 | 105 | - | - | |
Cpe02g00030 | 507 | Pfam | HMG (high mobility group) box | 38 | 107 | IPR009071 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe02g00030 | Cpe06g00017 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g00030 | Cpe-Chr2:157492 | Cpe06g00019 | Cpe-Chr6:86182 | 2.15E-50 | dispersed | |
Cpe10g00098 | Cpe-Chr10:663030 | Cpe02g00030 | Cpe-Chr2:157492 | 2.60E-12 | dispersed | |
Cpe05g01440 | Cpe-Chr5:10048037 | Cpe02g00030 | Cpe-Chr2:157492 | 4.60E-16 | transposed | |
Cpe14g01056 | Cpe-Chr14:8820899 | Cpe02g00030 | Cpe-Chr2:157492 | 9.71E-94 | wgd | |
Cpe02g00030 | Cpe-Chr2:157492 | Cpe06g00017 | Cpe-Chr6:80276 | 2.05E-149 | wgd | |
Cpe02g00030 | Cpe-Chr2:157492 | Cpe08g01288 | Cpe-Chr8:9296829 | 3.30E-29 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48967 | PF00505 | HMG_box | 6.90E-22 | CL0114 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe02g00030 | - | - | bhj:120085747 | 434.491 |