Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00052 ATGTCAACGCCGGCGAGGACCAAGAGCTGGAATGGCAACGTGGATAAGCATTACCCACCGGCGCTGGCCACCCATGATGAAGTTATTTCTGACCCCATTGTGTTTTGGGACACTTTGAGGCGTTTTCATTTTGTGATGAACACCAAGTTCATGATTCCTGTGATCGGAGGGAAGGAGCTAGACTTGCATGTTTTGTATTCAGAGGTTACAAGGAGGGGCGGCCATGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAGGTATATTTAAGTTTTCTCCTACGACCACAAGTGCTTCGTTTGTATTGAGAAAACACTATCTAAGTCTTCTGTACCATTATGAGCAAGTTTACTTGTTCGGCCGGCAGGGCCCCATCTGTGCCCCTCAAGCGCCATTATCTTTTGGTAGCCCTACGAGGGACAGCGAATTGGCTATGGTGGAATATACTCCCAAAACAACGTCGTTTTCGCCTGCGGAAGTTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTAGTGACTGTGAAATTGGGATCCGAGGTTCTTAGAGGAGTACTTTACCATCCAGATCAGCCAGTCCCGTCTGATCTACGTCCTCAGTCTACAAATGCCATTATACCTTACACTGGTGGCAGACAGAGACACGTTGGTCGACGACACCGGAGACGCCGGAGAAAGGCAGACCCTAACCACCCAAAACCGAATAGAAGTGGGTACAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAAACTAAGTCCTGAAGAAAGGATGGTTTATCAAAACATTGGGCTGAAAGACAAGGAAAGATACAAGAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCAGGCAACTGCTGATATTCAGGCAACTAACTGTTCAAAACGTGGAGAGTAA 969 46.34 MSTPARTKSWNGNVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHVGRRHRRRRRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNIGLKDKERYKRELKEYKEKMRQATADIQATNCSKRGE 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 275504 278513 + Cp4.1LG02g08200.1 Cpe02g00052 464001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00052 322 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Cpe02g00052 322 MobiDBLite consensus disorder prediction 196 241 - -
Cpe02g00052 322 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 235 302 IPR009071 -
Cpe02g00052 322 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Cpe02g00052 322 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Cpe02g00052 322 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 14 314 - -
Cpe02g00052 322 CDD HMGB-UBF_HMG-box 235 299 - -
Cpe02g00052 322 SMART ARID_2 26 116 - -
Cpe02g00052 322 MobiDBLite consensus disorder prediction 216 233 - -
Cpe02g00052 322 SMART hmgende2 234 303 IPR009071 -
Cpe02g00052 322 Pfam HMG (high mobility group) box 235 302 IPR009071 -
Cpe02g00052 322 SUPERFAMILY HMG-box 232 307 IPR036910 -
Cpe02g00052 322 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 14 314 - -
Cpe02g00052 322 SMART bright_3 30 121 IPR001606 GO:0003677
Cpe02g00052 322 Coils Coil 291 318 - -
Cpe02g00052 322 Gene3D High mobility group box domain 219 316 IPR036910 -
Cpe02g00052 322 Gene3D - 24 126 IPR036431 GO:0003677
Cpe02g00052 322 SUPERFAMILY ARID-like 26 127 IPR036431 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00052 Cpe06g00043 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00052 Cpe-Chr2:275504 Cpe17g00251 Cpe-Chr17:1660205 1.87E-91 dispersed
Cpe02g00052 Cpe-Chr2:275504 Cpe06g00043 Cpe-Chr6:227366 1.28E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48969 PF01388 ARID 6.00E-18 CL0123 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00052 - - csv:101219101 556.599