Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00060 ATGGCGACGGTTAATCACCGTTCGCCTAGTCCAACTAGTTTCAAGGGCGATAATACCTACGAGTTCCCGCCGAAGAATCATCTGTGTGCTTGGGCTGCAGTCGTCCGAGGCGAGCCGGAATTGATCTCTCAGTCTCCTTTATCTTCGTCATCATCTTTCTCTACAGTTTCTGCTCCAGAAACACCAGAAACCCCAGCTCCTGCTCCGACGTCTGATTTCTTTGCATCTTCCGAAGAGGGTGCTCCTGTAATGGGGGCAGACTCTTGGCCCGATCTTGCAGAGTCCGCGAAGGCTTCTCCTAAATTAGCAGGACCTACCATTGTACCTCCTCAGCGGCAAGCTACAAATAATGCCAAATCGGACCCCAGTCTGAAACATCCAGTTGTTGCTCGACAAAGATCCTCGAGGCGGTCCGGAGGTGGTGGCAGCTCAATGGGAGGGCCTGCACGAGGCTTTTATCGCCCTCCACCGCCACCGCCACCGCCACCACCTTTTCCTGTGTTTCAAATTCCTTGTAGTATGATGCCGGCAATTCCTGATCCTTCTCATGGAGAACCATTATTCAGGAGCAATAATCGGCATCCACGGGCTATTGCAGGCTTTGTACCTCAGACAAATTTTGTTTCTGATTACCCAAACTTCTTTCCTAGGGGGAATTTTGCTCTCCATCCTCGTGGTAATGGTCACTACCAAAACAATCGTGGGGGAAAGCAGCGTGATCAAGATCGTGGAGTATATTCTAATGCTCGAGATGCTCACTTTCGGCAGCACAGGCCCTCTACTAGAGGCTTTATGCGCCCTACGCCACCTTACACTGCACAGTTTCCCCAGCCTGTTATACCTTATGGGAATCCGATGCCTCCTCCTGAGTTTGTCTATGTCCCTACATGGCCCTTAGAGACTTACAGAGGAACGCCTTTCATGCCACCGCCTTCAGTGTACTATTCTGCCGTTGATCCCACTCTATCTGCATCACTAGTTAATCAGATTGAATATTATTTCAGTGACACGAATTTGATAACGGATGGATATCTAAGGTGCCGGATGGATGATCAAGGCTGGGTTCCAATTTCTCTGATAGCCAGTTTTTCTATGGTAAAGAATTTGACGACCAATATTCAATGGATAATAGAATCCTTGAGAACGTCGACTGTATTGGAAGTGCAGGATAATAGGATCAGAAAGCGAAATGAGTGGAAGAAATGGATAATAAATTCCAATCAGCTTAGAACTGATTTGACCTCTTCTACTCCAAGTGGATCAGATCATGATAGTCTGGCAACTTCTTTTCAAGGAGTCAGAGTGGATGAAGGTATAAACCAAAGTACGCCAAGCGACACCGATCCTCGTAATACCGAGAGTACTACCAAGATCCAATCTTCTGAGTCAGCTGGTTCTTCACAACTTACTAATGGGGAGGTGAATCAGGATGTTCAGACTGATATCTGA 1449 47.48 MATVNHRSPSPTSFKGDNTYEFPPKNHLCAWAAVVRGEPELISQSPLSSSSSFSTVSAPETPETPAPAPTSDFFASSEEGAPVMGADSWPDLAESAKASPKLAGPTIVPPQRQATNNAKSDPSLKHPVVARQRSSRRSGGGGSSMGGPARGFYRPPPPPPPPPPFPVFQIPCSMMPAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPRGNFALHPRGNGHYQNNRGGKQRDQDRGVYSNARDAHFRQHRPSTRGFMRPTPPYTAQFPQPVIPYGNPMPPPEFVYVPTWPLETYRGTPFMPPPSVYYSAVDPTLSASLVNQIEYYFSDTNLITDGYLRCRMDDQGWVPISLIASFSMVKNLTTNIQWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLATSFQGVRVDEGINQSTPSDTDPRNTESTTKIQSSESAGSSQLTNGEVNQDVQTDI 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 309296 313832 + Cp4.1LG02g08190.1 Cpe02g00060 464009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00060 482 MobiDBLite consensus disorder prediction 41 166 - -
Cpe02g00060 482 MobiDBLite consensus disorder prediction 222 246 - -
Cpe02g00060 482 PANTHER LUPUS LA PROTEIN-RELATED 44 467 IPR045180 -
Cpe02g00060 482 MobiDBLite consensus disorder prediction 1 20 - -
Cpe02g00060 482 ProSiteProfiles La-type HTH domain profile. 316 405 IPR006630 -
Cpe02g00060 482 SMART la 320 398 IPR006630 -
Cpe02g00060 482 Gene3D - 315 407 IPR036388 -
Cpe02g00060 482 CDD LAM 326 395 - -
Cpe02g00060 482 MobiDBLite consensus disorder prediction 1 19 - -
Cpe02g00060 482 Pfam La domain 326 381 IPR006630 -
Cpe02g00060 482 MobiDBLite consensus disorder prediction 413 482 - -
Cpe02g00060 482 PANTHER LA-RELATED PROTEIN 1B 44 467 - -
Cpe02g00060 482 SUPERFAMILY Winged helix DNA-binding domain 316 406 IPR036390 -
Cpe02g00060 482 MobiDBLite consensus disorder prediction 42 61 - -
Cpe02g00060 482 MobiDBLite consensus disorder prediction 151 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00060 K18757 LARP1; la-related protein 1 - csv:101220887 594.349
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00060 Cpe-Chr2:309296 Cpe10g00683 Cpe-Chr10:3929222 4.23E-53 dispersed
Cpe10g00682 Cpe-Chr10:3920780 Cpe02g00060 Cpe-Chr2:309296 4.15E-50 wgd
Cpe19g00874 Cpe-Chr19:6413062 Cpe02g00060 Cpe-Chr2:309296 1.71E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1168 . Blo12g00877 . Bda03g00295 . . Bma04g00255 . . . Cma01g01985 . Car01g01556 . . . . . . . . . . . . . . . . . . . Cone7ag1906 Cone17ag1422 Cone20ag0060 Lsi04g01766 Csa03g04297 Chy04g00400 . . . Bda08g01199 Bda01g01544 Bpe02g01740 Bpe05g00153 . Bma05g00183 Sed13g1555 Cmo01g02043 . . . . . . Cpe02g00060 Bhi09g02069 Tan01g5044 Cmetu04g1063 . . Mch11g0099 . . . . . . . . . . . Cme04g00449
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003873 7 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00060 Cpe_Chr02 FPKM 32.788433 34.756935 27.282892 28.192266 26.546309 25.387571 29.621817 28.593872 26.26536 26.338856