Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00076 ATGGGAGAGAAATCGAGGTCTAGAGGATTTTGTGGATGGTTTCTGGTGTTGGTGATTCTTGGTTTGATCGCTGGTGCTATAGTATTTGCAGTCAAGAAGAAGTCGAGTCACTCTGATGATGAGCCTGCTCCAGTTCCGGGCCCCCCTGGCGCAATCGTGAAGAAATATTCCGATGCTCTCAAAATAGCCATGAAGTTTTTCGATGTGCAGAAGTGTAATATCTCATTCTCATTTCTGATTGATATTTTGTGTTTCTGTTTTCTGGATTCAAATGCTAAGCACCTAGAAATCTTTAAGAGTAAATGTTTGGCAACTATTCAATTTACAATGTGGACTGTAGTGCCTTGGACCTTGCCAAGGACTGGAGATACTGGGAAGTTGGTAGATAACACAATTTCTTGGAGAGGGGATTCGGGGTTGAAAGATGGAACTGAAGCGAAATTGGATCTATCTAAGGGGATGTATGACGCTGGGGATCATATCAAGTTTGGTTTCCCAATGGCTTTTACTGCAACAGTGTTATCTTGGTCTATCCTCGAGTATGGAGATCAGATGGACGTCGTGGGTCAATTGGATCCTGCCAAAGATTCTCTAAAGTGGATTACTGACTATCTTATTAATGCTCATCCTTCAGAAAACGTGCTTTACATTCAGGTTTTATTGTCTCGCTTAAACTTCTTTGGCTCCGAAGGTGTTTCAAAGTCGGTTCAAGTTTACAAGAAAACAGCCGAAGCTGTCATGTGTGGCCTAATCCCAGAGTCTCCAACCGCAACAAGCAGCAGAACAGATGATGGTCTCATATGGGTCAGTGAATGGAACGCTCTGCAGCATCCTGTGTCTTCAGCATTCTTAGCTTCCCTTTACAGTGATTACATGCTTACCTCCAGAACTGCAAAATTTTCTTGCAGTGGGGAGACCTACACACCAGCAGATCTAAGAAATTTTGCCAAATCTCAGGCTGATTATGTGTTGGGCAACAATCCTATGAAAATGAGCTATCTGGTGGGATATGGTGACAAATTTCCACAGTATGTCCACCACAGAGGTGCGTCAATCCCAACTGATGCCACAACCAAATGTAAAGATGGGTTTAAGTGGCTCCTCTCGACCAAACCAAACCCAAATATAGCTTATGGAGCTCTTGTAGGCGGGCCCTTCCTTAATGAGTCATATATTGACTCACGAAACAATTCCATGCAAGGGGAACCAAGCACATACAACAGCGCTCTGGTCGTGGGCCTGCTATCGAGTTTAGTGACCACCTCCTCAGCATTGCAATCCTTCACCTAA 1290 43.95 MGEKSRSRGFCGWFLVLVILGLIAGAIVFAVKKKSSHSDDEPAPVPGPPGAIVKKYSDALKIAMKFFDVQKCNISFSFLIDILCFCFLDSNAKHLEIFKSKCLATIQFTMWTVVPWTLPRTGDTGKLVDNTISWRGDSGLKDGTEAKLDLSKGMYDAGDHIKFGFPMAFTATVLSWSILEYGDQMDVVGQLDPAKDSLKWITDYLINAHPSENVLYIQVLLSRLNFFGSEGVSKSVQVYKKTAEAVMCGLIPESPTATSSRTDDGLIWVSEWNALQHPVSSAFLASLYSDYMLTSRTAKFSCSGETYTPADLRNFAKSQADYVLGNNPMKMSYLVGYGDKFPQYVHHRGASIPTDATTKCKDGFKWLLSTKPNPNIAYGALVGGPFLNESYIDSRNNSMQGEPSTYNSALVVGLLSSLVTTSSALQSFT 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 387302 390310 + Cp4.1LG02g08080.1 Cpe02g00076 464025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00076 429 SUPERFAMILY Six-hairpin glycosidases 129 419 IPR008928 GO:0005975
Cpe02g00076 429 Gene3D - 222 428 IPR012341 GO:0005975
Cpe02g00076 429 PANTHER ENDO-1,4-BETA-GLUCANASE 218 429 - -
Cpe02g00076 429 PANTHER ENDO-1,4-BETA-GLUCANASE 7 72 - -
Cpe02g00076 429 PANTHER ENDO-1,4-BETA-GLUCANASE 123 219 - -
Cpe02g00076 429 PANTHER ENDOGLUCANASE 2 218 429 - -
Cpe02g00076 429 PANTHER ENDOGLUCANASE 2 7 72 - -
Cpe02g00076 429 PANTHER ENDOGLUCANASE 2 123 219 - -
Cpe02g00076 429 Pfam Glycosyl hydrolase family 9 121 219 IPR001701 GO:0004553|GO:0005975
Cpe02g00076 429 Pfam Glycosyl hydrolase family 9 232 415 IPR001701 GO:0004553|GO:0005975
Cpe02g00076 429 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 322 348 IPR018221 -
Cpe02g00076 429 Gene3D - 118 221 IPR012341 GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00076 - - - csv:101216943 391.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00076 Cpe-Chr2:387302 Cpe14g00648 Cpe-Chr14:4192383 1.71E-17 dispersed
Cpe15g00846 Cpe-Chr15:8315866 Cpe02g00076 Cpe-Chr2:387302 1.37E-24 transposed
Cpe14g01019 Cpe-Chr14:8607284 Cpe02g00076 Cpe-Chr2:387302 1.37E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1090 Blo01g01593 Blo12g00888 Bda01g00491 Bda03g00285 Bpe02g00354 Bpe04g00243 Bma04g00243 Bma01g02364 . . Cma01g01967 . Car01g01537 . . . . . . . . . . . . . . . . . . Cone4ag1963 . . . Lsi04g01733 Csa03g04270 Chy04g00425 . . . . . . . . . Sed01g2504 Cmo01g02025 . . . . . . Cpe02g00076 Bhi09g02097 Tan01g5007 Cmetu04g0346 . Hepe01g1623 Mch11g0127 . Cla05g01878 Cam05g2010 Cec05g2021 Cco05g2079 Clacu05g2003 Cmu05g1884 Cre05g2005 . . . Cme04g00478
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004941 3 1 2 3 3 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00076 Cpe_Chr02 FPKM 7.271913 9.342489 14.82572 13.521724 5.906711 5.436769 6.346766 23.248125 20.048801 22.832043