Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00078 ATGTCTCTAGTCGCTAAGCTCCACCTCGCCACTTCTCCCCAAATCAGCCTCAATACCCTCCAAACTACAATAAAAAGAACACCTGTACCCGTTGCCACTTACTATACCAAGATTAAATCCAAACCCATTTACGTTTCTGAGTCTTTGGGGTTTAAACCCGCAATGCAGGGCTATTCGCCTCGTTCTCTGCGCTCTTCGATCAAGTGCTCGCTGATCGAGCCTGATGGTGGGGCTGTTGTCGAGTTGATTGTGCCCGAGAGTGAAAGGGCTTCGAGGGTTTTGGAGGCCGAATCATTGCCGAAGGTGAAATTGACCCGAATTGATCTCGAGTGGGTTCATGTCATTAGTGAAGGATGGGCGAGCCCATTGAAAGGGTTCATGCGAGAGGAGGAGTATTTGCAGAGTTTGCATTTCAATTGCTTGAAAATTAAAGATGGGTCTCTTGTCAACATGTCGCTTCCCATTGTTCTTGCCATCGGCGACGATGTTAAGGAACAAATTGGGTCCTCACCCAATGTGGGGTTGCTCGGTCCCAATGGAGATTTGGTCGGCATTCTTCGCAGCATTGAGATATTCAAGCATAACAAGGAAGAGAGAATAGCTAGAACTTGGGGAACAACTGCACCAGGGCTGCCATATGTTGATGAAGTCATTACAAATGCTGGAAACTGGCTCATTGGTGGAGATCTTGAGGTAATAAACCCCATCAAATACAACGATGGACTTGATCATTATAGGCTCTCTCCGAAACAGCTACGACAAGAGTTCGATAGGCGTCAGGCCGATGCTGTTTTCGCCTTCCAGTTGAGGAACCCTGTGCATAATGGACACGCTTTGTTAATGAACGATACACGTAAACGACTTCTCGACATGGGTTACAAGAATCCAATTCTATTGCTTCATCCTTTGGGAGGTTTTACAAAAGCAGATGATGTGCCATTGGATGTTCGAATGGAGCAACATAGCAAGGTTTTAGAAGATGGAGTCCTTGACCCCGAAACAACCATCGTGTCCATTTTCCCGTCACCGATGCATTACGCCGGTCCTACTGAAGTACAATGGCATGCTAAAGCAAGGATCAACGCAGGTGCAAATTTCTACATTGTTGGTCGAGACCCTGCTGGAATGGGGCACCCAACAGAGAAGAGAGATCTATATGATCCAGACCATGGCAAGAAGGTCTTAAGTATGGCCCCTGGGCTTGAGAAGCTAAACATATTGCCCTTCAAGGTCAGTATCTCAGTGACCTTCCCTTCTCCTTTTCCCACTTTTCCACCCTCCCTCTGCGTTTTAACACCCCCTCGACCGCAGGTGGCTGCATATGATACTGTGGCAAAGGAGATGGCGTTCTTCGACCCTTCACGAGCAAAAGATTTCCTCTTCATCTCCGGAACAAAGATGCGAACTTTCGCAAGGACCGGCGAGAACCCTCCCGACGGTTTCATGTGCCCCGGCGGATGGAAGGTGTTGGTGAACTACTACAAGAGCTTGCAGGCCGAAGATGCGACATCGCAGCAACCAGCATTGTCAGTTTAG 1536 48.18 MSLVAKLHLATSPQISLNTLQTTIKRTPVPVATYYTKIKSKPIYVSESLGFKPAMQGYSPRSLRSSIKCSLIEPDGGAVVELIVPESERASRVLEAESLPKVKLTRIDLEWVHVISEGWASPLKGFMREEEYLQSLHFNCLKIKDGSLVNMSLPIVLAIGDDVKEQIGSSPNVGLLGPNGDLVGILRSIEIFKHNKEERIARTWGTTAPGLPYVDEVITNAGNWLIGGDLEVINPIKYNDGLDHYRLSPKQLRQEFDRRQADAVFAFQLRNPVHNGHALLMNDTRKRLLDMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAPGLEKLNILPFKVSISVTFPSPFPTFPPSLCVLTPPRPQVAAYDTVAKEMAFFDPSRAKDFLFISGTKMRTFARTGENPPDGFMCPGGWKVLVNYYKSLQAEDATSQQPALSV 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 393988 397010 + Cp4.1LG02g08020.1 Cpe02g00078 464027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00078 511 SUPERFAMILY PUA domain-like 72 240 IPR015947 -
Cpe02g00078 511 TIGRFAM sopT: sulfate adenylyltransferase 74 412 IPR002650 GO:0000103|GO:0004781
Cpe02g00078 511 Pfam PUA-like domain 72 234 IPR025980 -
Cpe02g00078 511 SUPERFAMILY Nucleotidylyl transferase 243 496 - -
Cpe02g00078 511 Gene3D Sulfate adenylyltransferase 70 238 - -
Cpe02g00078 511 PANTHER BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE 437 506 - -
Cpe02g00078 511 CDD ATPS 99 493 IPR002650 GO:0000103|GO:0004781
Cpe02g00078 511 PANTHER BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE 66 413 - -
Cpe02g00078 511 Pfam ATP-sulfurylase 244 492 IPR024951 GO:0004781
Cpe02g00078 511 Gene3D HUPs 239 499 IPR014729 -
Cpe02g00078 511 PANTHER ENDOGLUCANASE 437 506 - -
Cpe02g00078 511 PANTHER ENDOGLUCANASE 66 413 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00078 K13811 PAPSS; 3'-phosphoadenosine 5'-phosphosulfate synthase [EC:2.7.7.4 2.7.1.25] - csv:101217416 872.848
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00078 Cpe-Chr2:393988 Cpe08g00293 Cpe-Chr8:1880736 0 dispersed
Cpe02g00078 Cpe-Chr2:393988 Cpe12g00173 Cpe-Chr12:1123031 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1086 Blo01g01591 . Bda01g00494 . Bpe02g00356 . . Bma01g02362 . . Cma01g01965 . Car01g01535 . . . . . . . . . . . . . . . . . . . . Cone17ag1393 Cone20ag0087 Lsi04g01731 Csa03g04268 Chy04g00427 . . . . . . . . . Sed01g2503 Cmo01g02023 . . . . . . Cpe02g00078 Bhi09g02099 Tan01g5005 Cmetu04g0401 . Hepe01g1625 Mch11g0129 . Cla05g01885 Cam05g2018 Cec05g2029 Cco05g2086 Clacu05g2009 Cmu05g1890 Cre05g2013 . . . Cme04g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000781 5 3 3 2 3 3 4 3 3 3 2 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 3 3 2 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00078 Cpe_Chr02 FPKM 20.760717 22.710373 40.541687 42.918648 20.364389 16.073093 21.768818 37.084393 38.53006 39.153423