Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00083 ATGGGCTCTGTGGATGAGAAGCTCAAAACAATAGGGGGGTTCATTACTCACGCCCCACAGACTAACCTTCTCGACGACATGAAACTGTTGAAAGAAATGCAAGATCAAACTGGGGCCCGGAAGGCTATAAACTCCGAGCTATGGCACGCTTGTGCTGGTCCGCTTGTTTCCTTGCCGCATATGGGCAGTCTTGTTTATTACTTTCCTCAGGGACATAGTGAACAGGTGGCAGTTTCTACCAAGAGAACAGCAACCTCACAGATTCCAAATTATCCAAATCTTCCCTCTCAGTTGATGTGCCAAGTTCATAATGTTACGTTACATGCCGATAAAGATTCAGATGAAATCTATGCTCAGATGAGTCTTCAACCGGTGAACTCTGAAAAAGATGTCTTCATAGTTCCGGACTTTGGACTACGGCAGAGTAAACATCCAAACGAGTTCTTCTGTAAAACTTTGACTGCCAGTGACACCAGCACACATGGTGGGTTTTCAGTGCCACGCAGAGCTGCTGAAAAGCTCTTTCCTCCATTGGATTACACAATGCAGCCACCAACTCAGGAGCTTGTTGTCCGTGATTTGCACGACAATACCTGGACTTTTCGCCACATATATCGCGGGCAGCCAAAGCGACACCTTCTCACAACGGGATGGAGTCTATTCGTCGGGGCCAAGAGGCTTAGAGCTGGCGATTCTGTCCTTTTTATCAGGGATGAAAAGTCACAGTTGCTCGTTGGAGTGAGGCGTGCTAACCGGCAACAATCAATGTTGCCATCATCGGTTCTATCTGCTGATAGTATGCACATAGGGGTTCTTGCTGCTGCAGCTCATGCTGCTGCCAATCGGAGTCCGTTCACAATCTTCTACAACCCCAGAGCATGTCCTTCAGAGTTTGTTATTCCCTTAGCCAAGTATCGCAAATGTGTATACGGAACTCAGCTTTCTGCAGGCATGAGGTTTGGGATGATGTTTGAAACAGAAGAGTCCGGTAAACGCCGATACATGGGAACAATTGTTGGAATTAGCGACTTAGATCCACTTAGGTGGCCAGGTTCCAAGTGGCGAAATCTCCAGGTGGAGTGGGATGAGCCAGGGTGCTGCGACAAGCAGAACAGGGTTAGTTCATGGGACATAGAAACCCCAGAAAGTCTCTTCATTTTTCCTTCTCTGACTTCGGGTCTTAAACGCCCATTACACGGTGGGTTCTTGGGAGAAACTGATTGGGGAAGTCTGGTGAAGAGACCAATGCTTCGTGTTCCTGAAAATGTTTCATATGCGTCAACTTTATGCTCCGAACCACTGATGAAGATGCTACTGAGGCCTCAACTGGTTAACCTTCACGGCACCACTTTACAGCAGCAGGACATGATGGGGGTTATGCAGCCAGTAACCAATCCCAAAATACAGCAGCAGGTTACACCGTCGTCTCAGCATCAAAATCATCATCAGCCAGCTCCTTCGCCATCTACTGATCCCATTAACTCAAATTCATCACCTAAAGCAAATGAACCAGGAAAAGTACAGGATCCGGCGGCCATTGAAAGTGAAGCTCCTACTGGAGCTGAGGCAGATAAGTCGAAATATGAACGTGAAGTTTCAACCTGTCAGTCTAATCCATTGCCGCCGGTTGATTGTGGGGAGGATAAACTCACTGGTAATGAAGTGAATATGCAGACGCTTGTAAACCAGCTTTCATTTGTGAACCAGAATCAGATCCCCATGCAGTTGCAATCCGTATCATCCTGGCCCATGCAGCCTCAGCTGGAATCACTAATCCAACATCCCCAACCAATTGACATGCCTCAGCCTGAATTTCCCAATTCAAATGGTTTGATTTCATCCATGGATGGCGATGGATGCTTGATTAACCCTACTTGTCTACCTCTTTCTGGTGTAATGAGATCACCAGGGAATCTCTCTATGTTGGGATTGCAAGACTCCTCAACAGTGTTCTCAGAGGCTCTTAATTTTCCTATACCCTCTACAGGTCAAGAGATGTGGGATCCTCTTAGTAATATAAGGTTCTCTTCTCAAAACAATCACCTCGTCTCGTTCTCCCATCCTGATGCATCTAACCTGAACTGTATGGCTAATGCGAATGTTACGAGAGATGTTTCCGATGAGAGCAACAACCAAAGTGGGATATATGGTTGTTCTAACCTTGAAATCAGTAATGGTGGAAATACTTTGGTTGATCCTGCTGTTTCGAGTACCATTCTTGATGATTATTGCACACTCAAAGATGCTGACTTCCCACATCCTTCAGATTGCTTGGCTGGGAACTTCAGTTCGAGCCAAGATGTTCAGTCTCAGATCACCTCTGCTAGTTTGGGAGATTCTCAGGCTTTCTCCAGGCAAGAGTTCCATGATAATTCAGGTGGTACATCCTCTTGCAATGTGGATTTTGATGAAGGCAATCTTCTGCAGAATGGCTCGTGGAAACAAGTGGTACCGCCCATGAGGACTTACACCAAGGTCCAGAAGGCGGGATCAGTTGGTAGGTCTATTGATGTCACAAGTTTTAAGAACTACGAAGAACTGTGCTCTGCTATAGAGTGTATGTTTGGACTTGAAGGGTTGCTTAATGATCCAAGAGGCTCAGGATGGAAACTGGTTTATGTGGATTATGAGAACGACGTGCTGCTTATTGGCGATGATCCCTGGGAGGAATTTGTTAGCTGCGTACGGTGCATCAGAATCTTGTCACCTTCAGAAGTTCAGCAAATGAGTGAAGAGGGAATGAAGCTTCTCAACAGTGCTATGATGCAAGGCATGAATTGCTCCATATCAGAAGGTGGCCGAGCTTAA 2808 46.26 MGSVDEKLKTIGGFITHAPQTNLLDDMKLLKEMQDQTGARKAINSELWHACAGPLVSLPHMGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVHNVTLHADKDSDEIYAQMSLQPVNSEKDVFIVPDFGLRQSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLVGVRRANRQQSMLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWDIETPESLFIFPSLTSGLKRPLHGGFLGETDWGSLVKRPMLRVPENVSYASTLCSEPLMKMLLRPQLVNLHGTTLQQQDMMGVMQPVTNPKIQQQVTPSSQHQNHHQPAPSPSTDPINSNSSPKANEPGKVQDPAAIESEAPTGAEADKSKYEREVSTCQSNPLPPVDCGEDKLTGNEVNMQTLVNQLSFVNQNQIPMQLQSVSSWPMQPQLESLIQHPQPIDMPQPEFPNSNGLISSMDGDGCLINPTCLPLSGVMRSPGNLSMLGLQDSSTVFSEALNFPIPSTGQEMWDPLSNIRFSSQNNHLVSFSHPDASNLNCMANANVTRDVSDESNNQSGIYGCSNLEISNGGNTLVDPAVSSTILDDYCTLKDADFPHPSDCLAGNFSSSQDVQSQITSASLGDSQAFSRQEFHDNSGGTSSCNVDFDEGNLLQNGSWKQVVPPMRTYTKVQKAGSVGRSIDVTSFKNYEELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSAMMQGMNCSISEGGRA 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 423119 428124 + Cp4.1LG02g08050.1 Cpe02g00083 464032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00083 935 Pfam AUX/IAA family 821 908 IPR033389 -
Cpe02g00083 935 MobiDBLite consensus disorder prediction 468 544 - -
Cpe02g00083 935 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677
Cpe02g00083 935 ProSiteProfiles PB1 domain profile. 821 905 IPR000270 GO:0005515
Cpe02g00083 935 MobiDBLite consensus disorder prediction 468 503 - -
Cpe02g00083 935 CDD B3_DNA 148 249 IPR003340 GO:0003677
Cpe02g00083 935 Gene3D - 147 250 IPR015300 -
Cpe02g00083 935 Gene3D - 818 910 - -
Cpe02g00083 935 SUPERFAMILY CAD & PB1 domains 819 900 - -
Cpe02g00083 935 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677
Cpe02g00083 935 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe02g00083 935 SUPERFAMILY DNA-binding pseudobarrel domain 136 278 IPR015300 -
Cpe02g00083 935 Coils Coil 934 935 - -
Cpe02g00083 935 Gene3D - 313 385 - -
Cpe02g00083 935 PANTHER AUXIN RESPONSE FACTOR 5 30 925 - -
Cpe02g00083 935 SMART B3_2 149 251 IPR003340 GO:0003677
Cpe02g00083 935 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 925 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00083 Cpe06g00079 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00083 Cpe-Chr2:423119 Cpe11g00650 Cpe-Chr11:4296398 1.16E-36 dispersed
Cpe02g00083 Cpe-Chr2:423119 Cpe06g00079 Cpe-Chr6:395016 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48970 PF02362 B3 3.80E-21 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00083 K14486 - csv:101216825 1706.42