Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00088 ATGTCTTCGCTCGACGCCGGTTCCAAGGTCGAGGAGGTTAAGGACAAGGAAGACAAGGCAGGGGAGCTTTTGTTCTGTGGTGCTACCTGCTGGGATATCATTGGTCGGAAGAAAGGCTCTGTGGAAGGCAACTTGAGTTCCCCCACTCGCCTCCGCCCTCTTGTCGGAGTTGACATTCGTTTTGTCGCTTCTGGTTGCACATCGTGTCATTGTGTGGCATTGGACGTGGAAGGGCGTTGCTATACCTGGGGACGCAATGAGGCATTAATTTGTGTTCAGAAAGGTCAATTGGGTCATGGAGATTTGATTCAGCGAGACAGACCCACAATAGTATCTGACCTTTCGAAGTATAAGGTAGTTAAAGCTGGAGCAGGGAGAAACCACACAGTTGTGGTTACTGAGGATGGAAGTTCTCTATCTTTTGGTTGGAACAAACATGGCCAATTGGGTTCAGGTTCAGTGAAAAATGAGATTGAGTCGTCTCCTGTACGTTGTCTTGTATCTGAAGTGAAACATACTGCTTGTGGCGGTGATTTCACTGTGTGGTTATCTTCTATTGAAGGAGCTTCCATACTTACTGCAGGTCTTCCACAGTATGGACAGCTTGGTCATGGAACGGATAATGAGTACAACACAAAGGATAGCTCAGTCAGACTTGCTTATGAAGCCCAACCACGCCCCAGAGCTATTGCTTCTCTTGCTGGAGAAGAAATTGTTAAAGTTGCTTGTGGAACAAATCATACAGTGGCCGTGGATCGTAATGGCTTTGTTTACACGTGGGGCTTTGGTGGTTATGGAAGACTTGGGCATAGAGAGCAGAAGGATGAATGGGCCCCTCGACGCGTTGATGTATTCCAGAGGAAAAACACGCTTCCTCCTGATGCTATTGTTTCAGCAGGGTCTGTTAACTCTTCTTGTACTGCAGCAAGAACTCTTTTAGATATTGGTATTTTCTTCCCTTCTTTCAGTGGTTGGAATATAAGATGCATGGATTCGGGCGGCATGCACCATTTTGTGGGTGCCGATAACTCGTGCATAAGTTGGGGCCATGCACAATATGGAGAGCTGGGATATGGCCCAACAGGGCAGAAGTCTTCTGCTGTACCCAAGAAAGTCGACATCCTGGAGAACATGCATGTCGTAAGTGTTGCATGTGGTGTTGGACACTCGATGCTTGATATACACGATGGCAAAGCTTTTGATGAAGAGAATGCAGCTTCGAATGCAGTACCACAGAATAAAGGTTCGGCGGTCAAGCAAACTCCGAAGGCTGCTAAAGCGTTGCACAACGCGAAGAAGAGGAAGAAGGCTAAAGCTTCATCTGAGTCAGAGGAGGAGGAAGAAGAGGAAAATGAAGATGGCAGCAGCAGCGATGAAGATGAGGCGAATGGGCTGTCGGATTCAAGTGAACAATATGGGAGCAAAAGTAAGGGTAGAGGTAGACCAAAGGGAAGTAAAAACTCATCTGGCGGAGGAAAAGGCAGTGGCCGTGGACGGGGACGCCCCCCGTCGAACAAGAAATCAACGCCTTCTCAAGGAAAAGCGGGAGCAGGTAAGAGAGGTAGACCTCGAAAGACATGA 1581 47.94 MSSLDAGSKVEEVKDKEDKAGELLFCGATCWDIIGRKKGSVEGNLSSPTRLRPLVGVDIRFVASGCTSCHCVALDVEGRCYTWGRNEALICVQKGQLGHGDLIQRDRPTIVSDLSKYKVVKAGAGRNHTVVVTEDGSSLSFGWNKHGQLGSGSVKNEIESSPVRCLVSEVKHTACGGDFTVWLSSIEGASILTAGLPQYGQLGHGTDNEYNTKDSSVRLAYEAQPRPRAIASLAGEEIVKVACGTNHTVAVDRNGFVYTWGFGGYGRLGHREQKDEWAPRRVDVFQRKNTLPPDAIVSAGSVNSSCTAARTLLDIGIFFPSFSGWNIRCMDSGGMHHFVGADNSCISWGHAQYGELGYGPTGQKSSAVPKKVDILENMHVVSVACGVGHSMLDIHDGKAFDEENAASNAVPQNKGSAVKQTPKAAKALHNAKKRKKAKASSESEEEEEEENEDGSSSDEDEANGLSDSSEQYGSKSKGRGRPKGSKNSSGGGKGSGRGRGRPPSNKKSTPSQGKAGAGKRGRPRKT 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 444817 450174 - Cp4.1LG02g07710.1 Cpe02g00088 464037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00088 526 Pfam Regulator of chromosome condensation (RCC1) repeat 254 292 IPR000408 -
Cpe02g00088 526 Pfam Regulator of chromosome condensation (RCC1) repeat 192 251 IPR000408 -
Cpe02g00088 526 Pfam Regulator of chromosome condensation (RCC1) repeat 347 391 IPR000408 -
Cpe02g00088 526 Pfam Regulator of chromosome condensation (RCC1) repeat 135 181 IPR000408 -
Cpe02g00088 526 Pfam Regulator of chromosome condensation (RCC1) repeat 77 132 IPR000408 -
Cpe02g00088 526 PRINTS AT-hook-like domain signature 515 525 IPR017956 GO:0003677
Cpe02g00088 526 PRINTS AT-hook-like domain signature 476 486 IPR017956 GO:0003677
Cpe02g00088 526 PRINTS AT-hook-like domain signature 494 505 IPR017956 GO:0003677
Cpe02g00088 526 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 189 254 IPR000408 -
Cpe02g00088 526 Gene3D - 13 218 IPR009091 -
Cpe02g00088 526 Gene3D - 219 400 IPR009091 -
Cpe02g00088 526 SMART AT_hook_2 476 488 IPR017956 GO:0003677
Cpe02g00088 526 SMART AT_hook_2 496 508 IPR017956 GO:0003677
Cpe02g00088 526 PANTHER PROTEIN RCC2 10 512 IPR028641 -
Cpe02g00088 526 SUPERFAMILY RCC1/BLIP-II 19 394 IPR009091 -
Cpe02g00088 526 MobiDBLite consensus disorder prediction 443 465 - -
Cpe02g00088 526 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 343 396 IPR000408 -
Cpe02g00088 526 MobiDBLite consensus disorder prediction 407 526 - -
Cpe02g00088 526 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 255 310 IPR000408 -
Cpe02g00088 526 PRINTS Chromosome condensation regulator RCC1 signature 241 257 IPR000408 -
Cpe02g00088 526 PRINTS Chromosome condensation regulator RCC1 signature 119 132 IPR000408 -
Cpe02g00088 526 PRINTS Chromosome condensation regulator RCC1 signature 138 154 IPR000408 -
Cpe02g00088 526 PRINTS Chromosome condensation regulator RCC1 signature 257 271 IPR000408 -
Cpe02g00088 526 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 241 251 IPR000408 -
Cpe02g00088 526 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 78 135 IPR000408 -
Cpe02g00088 526 Coils Coil 429 452 - -
Cpe02g00088 526 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 122 132 IPR000408 -
Cpe02g00088 526 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 136 186 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00088 - - - bhj:120086299 776.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00088 Cpe-Chr2:444817 Cpe19g00104 Cpe-Chr19:824257 3.66E-17 dispersed
Cpe02g00088 Cpe-Chr2:444817 Cpe01g01582 Cpe-Chr1:9676087 4.96E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1063 . . Bda01g00500 . Bpe02g00362 . . Bma01g02357 . . Cma01g01953 . Car01g01525 . . . . . . . . . . . . . . . . . . . . Cone17ag1389 Cone20ag0092 Lsi04g01721 Csa03g04257 Chy04g00438 . . . . . . . . . . Cmo01g02012 . . . . . . Cpe02g00088 Bhi09g02117 Tan01g4990 . . Hepe01g1636 Mch11g0139 . . . . . . . . . . . Cme04g00492
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010513 1 2 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00088 Cpe_Chr02 FPKM 53.58564 54.487259 64.424591 63.001499 52.963863 58.010395 54.527225 67.620285 64.721893 65.024826