Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00094 ATGGGCTTTCCAGTTAAGTTTCAGAAAGTTTCGGAGATGAAGATTCAGTGCGACGTCTGCAACAAAGACGAGGCGCTGCTTTTCTGCACCGCCGACGACGCCGCCCTATGCTCCACCTGCGACCACAGCGTCCACCACGCCAACGTCCTCGCCTCCAAGCACCTCCGCTTCCCCCTCCTCCACCCCAACAACAACAATTTCCCACTCTGCGACATCTGCCAGGAGAGACGAGCGTTCCTATTCTGTCAGCAGGACCGGGCGATTCTATGCAAAGACTGCGACTTTCCAATCCATTCGGTGAATGAGCTTACCCAGAAGCACGATCGGTTCCTTCTCACCGGCGTGAAGCTCTCGTGTGTGTCTGCCGGGAATGTGCCGTCGTCTTCCTCTATGTCCGAGAAGATGGCTAATGCTTCTTCTGCCCCTGTTTCGAATTCGCCTTCAATTGCGGAGAGTTCAACTTCTAACGCTCAGACGGTGGGTGCGTCCACCGATGGGTGTGAGGCGATGAATGGTGTGGAGTATTTTATTGACGCGATTTCAGGGTGGCATTTTGATGACTTTCTTGATTCTTCCTCTACCGATGCTCCTCCTTTTGGTTTCTGTAAGCTGCAGAGCGATGAGGTTGATGGTGATTGGGTTTTTCAATTTGTTGATGATTTAGTTGAATTAGAAACGAGCGCGGATTCTTTCTCGTCGGAGGATTGGGGAATTTGGAGCCCTGAGGAGGAGGCTGCCGTACCTCTGTTTTGCTCAGAGATTGAGATGGCGGAAAGGAAGAAAGGTAGAACCTTGAAGGAGAAAACCAGAGGAGGAGGAGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGACGGTGGGATTTCGGTGCCGGAGGTTGATCTCCGGCCGAGAAGATTCAGATCCTCTTGA 909 52.81 MGFPVKFQKVSEMKIQCDVCNKDEALLFCTADDAALCSTCDHSVHHANVLASKHLRFPLLHPNNNNFPLCDICQERRAFLFCQQDRAILCKDCDFPIHSVNELTQKHDRFLLTGVKLSCVSAGNVPSSSSMSEKMANASSAPVSNSPSIAESSTSNAQTVGASTDGCEAMNGVEYFIDAISGWHFDDFLDSSSTDAPPFGFCKLQSDEVDGDWVFQFVDDLVELETSADSFSSEDWGIWSPEEEAAVPLFCSEIEMAERKKGRTLKEKTRGGGGGGGGGGGGGDGGISVPEVDLRPRRFRSS 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 475486 476908 - Cp4.1LG02g07680.1 Cpe02g00094 464043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00094 302 Gene3D Classic Zinc Finger 13 107 - -
Cpe02g00094 302 Pfam B-box zinc finger 68 108 IPR000315 GO:0008270
Cpe02g00094 302 Pfam B-box zinc finger 15 54 IPR000315 GO:0008270
Cpe02g00094 302 CDD Bbox1_BBX-like 69 112 - -
Cpe02g00094 302 PANTHER B-BOX ZINC FINGER PROTEIN 21 13 253 - -
Cpe02g00094 302 MobiDBLite consensus disorder prediction 126 161 - -
Cpe02g00094 302 ProSiteProfiles Zinc finger B-box type profile. 12 59 IPR000315 GO:0008270
Cpe02g00094 302 CDD Bbox1_BBX-like 17 59 - -
Cpe02g00094 302 PANTHER B-BOX ZINC FINGER PROTEIN 22 13 253 - -
Cpe02g00094 302 SMART bboxneu5 65 112 IPR000315 GO:0008270
Cpe02g00094 302 SMART bboxneu5 12 59 IPR000315 GO:0008270
Cpe02g00094 302 MobiDBLite consensus disorder prediction 261 302 - -
Cpe02g00094 302 ProSiteProfiles Zinc finger B-box type profile. 65 112 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00094 - - - mcha:111007828 325.094
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00094 Cpe07g00385 CCT
Cpe02g00094 Cpe07g00385 ECH
Cpe02g00094 Cpe11g00234 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00094 Cpe-Chr2:475486 Cpe04g00107 Cpe-Chr4:966757 6.86E-51 dispersed
Cpe10g00649 Cpe-Chr10:3738125 Cpe02g00094 Cpe-Chr2:475486 2.23E-20 wgd
Cpe11g00234 Cpe-Chr11:1265779 Cpe02g00094 Cpe-Chr2:475486 8.97E-56 wgd
Cpe16g00269 Cpe-Chr16:4700975 Cpe02g00094 Cpe-Chr2:475486 5.09E-49 wgd
Cpe02g00094 Cpe-Chr2:475486 Cpe07g00385 Cpe-Chr7:2483126 9.58E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1041 Blo01g01583 . Bda01g00506 . Bpe02g00365 . . . Cmo05g00289 Cmo12g00380 Cma01g01945 . Car01g01519 Car12g00406 . . Cpe07g00385 Bhi04g00162 . . . . . . Cla08g01445 Cam08g1926 Cec08g1501 Cco08g1638 Clacu08g1616 . Cre08g1403 Cone4ag1948 . Cone17ag1378 Cone20ag0105 . . . Cme03g01907 . Blo18g00789 Bda08g01236 Bda01g01521 Bpe02g01717 Bpe05g00126 Bma01g00739 Bma05g00152 . Cmo01g02006 . Cma12g00429 Cma05g00283 . . Cpe11g00234 Cpe02g00094 . . . . . . . Cla11g00377 Cam11g0424 Cec11g0420 Cco11g0413 Clacu11g0546 Cmu11g0403 Cre11g0890 Lsi08g01348 Csa02g02104 Chy03g01411 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48971 PF00643 zf-B_box 1.30E-06 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00094 Cpe_Chr02 FPKM 12.961027 13.410772 12.68191 12.03217 10.694757 8.810764 10.982368 14.892409 14.80938 15.978152