Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00097 AAAAACACGAAATATGCCATGAAAAAAGAAATAAAAATCTCCGGTCAAGATTCATTTGTGTTAATCGGATCCATGGAATCTCCGTCTGAAATGGAGGCACAAAAGAACGACGGCGGGCGGAGACCACCGGTTATTTCGCCGGCGTTGGAGGCAATGCTAAGGAAATTCCACGCGGGGTATTTTCGGATCGGAATGTCTATAAGCGGGCAAGCTTTGATATGGGCAATGCTGGCGGAAGAGAACCACGGTCCGATTAATCGAACGGTTCTCCTTGTTCTGTGGTCCCTCGCTTTCTTTATTCTTTTTCTTCTCTCTTTTCTTTACCTCTTGAGATGCGTCTTTCACTTCCCGTTGGTTCAGTGCGAATTTTTTCATCACGTTGGGGTTAATTACCTATTTGCCCCCTGGATTTCCTGGTTCCTTTTGCTCCAATCCATGCCCTTTCTGGACACACCAAACTTTGTCTACATGATTTTGTGGTGGGTTTTTGCAATCCCAGTTGTGATTCTGGACGTGAAAATCTACGGGCAGTGGTTCACCGAAGGAAGGCGGTTCCTATGCATCGTTGCGAATCCGACAAGCCAGCTGTCGGTAATCGGAAATTTGGTGGGCGCTCAGGCGGCGGCCAAAATGGGATGGAAAGAGAGCGCCCTGTGTTTTTTTTCACTGGGCATCGTTCATTACTTGGTGTTGTTCGTGACACTTTATCAACGATTCTCCGGCGCGAATCGGCTGCCGTCCATGCTCCGGCCGGTGTTCTTTCTTCACATAGCAGCGCCAAGCGTGGCGAGCGTGGCATGGGAATCAATAAACGGTGGTTTTGATATGACGTCAAAAATGCTATTTTTTCTGTCACTGTTTATATTCATGGCACTAGCTTGTAGACCGTTTCTATTCAGGAGAGCAATGAAGAGATTCAATATAGCGTGGTGGGCCTTCTCCTTTCCACTCTCTGCTCTTGCTCTTGCCTCCGTTGAATACCATCGCCACATCCAAACTCTCCCTTCCAACCTTCTAATGCTTCTTCTTCTTGCCCTTTCGGTTCTCGTCGCCCTCCTCCTCTTCCTCATTACGTTGCTTAACTCCGACGTGCTCTTACTGGACGATGACACCCTTTACAATCTCCCCAGCAACCATTTGGATTCATCTCTTAAAACAACCCCAACCTCCAAAACCATCAACTGA 1185 47.59 KNTKYAMKKEIKISGQDSFVLIGSMESPSEMEAQKNDGGRRPPVISPALEAMLRKFHAGYFRIGMSISGQALIWAMLAEENHGPINRTVLLVLWSLAFFILFLLSFLYLLRCVFHFPLVQCEFFHHVGVNYLFAPWISWFLLLQSMPFLDTPNFVYMILWWVFAIPVVILDVKIYGQWFTEGRRFLCIVANPTSQLSVIGNLVGAQAAAKMGWKESALCFFSLGIVHYLVLFVTLYQRFSGANRLPSMLRPVFFLHIAAPSVASVAWESINGGFDMTSKMLFFLSLFIFMALACRPFLFRRAMKRFNIAWWAFSFPLSALALASVEYHRHIQTLPSNLLMLLLLALSVLVALLLFLITLLNSDVLLLDDDTLYNLPSNHLDSSLKTTPTSKTIN 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 488826 490143 - Cp4.1LG02g07760.1 Cpe02g00097 464046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00097 394 PANTHER - 25 376 IPR030183 GO:0006873|GO:0008308|GO:0016021
Cpe02g00097 394 Gene3D - 50 365 IPR038665 -
Cpe02g00097 394 CDD TDT_SLAC1_like 56 333 - -
Cpe02g00097 394 PANTHER OS11G0274300 PROTEIN 25 376 - -
Cpe02g00097 394 Pfam Voltage-dependent anion channel 55 359 IPR004695 GO:0016021|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00097 - - - cmo:103503902 454.907
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00097 Cpe-Chr2:488826 Cpe15g00740 Cpe-Chr15:7712992 5.35E-126 dispersed
Cpe02g00097 Cpe-Chr2:488826 Cpe05g00631 Cpe-Chr5:3852371 2.35E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1036 . . . . . . . . . Cmo15g00693 Cma01g01940 . Car01g01516 . . . . . . . . . . . . . . . . . . . . . . . Csa03g04252 Chy04g00444 . . . . . . . . . . Cmo01g02002 . . . . . . Cpe02g00097 . . . . . . . Cla05g01901 Cam05g2037 Cec05g2045 Cco05g2101 Clacu05g2029 Cmu05g1909 Cre05g2031 . . . Cme04g00497
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014475 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 0 1 0 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00097 Cpe_Chr02 FPKM 0.228517 0.0 4.830389 4.626609 3.79959 3.955788 4.006421 0.460943 0.417392 0.214804