Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00098 ATGACGGGGTTGTTATATTTAGGTGGTAAACAAGAGGATGATCAAGAACAAAGAGGAAGAGAGCAGCAATTGTTTTTGTACAATAGTAGAAACAACGAGGAGATCTACTCCAAGGGGTTGGAGATATGGCCACAATATGGGCAGCAGCATCAAGCGGTGGAGAATTACATTTCCTTTGGAGTGGGGCCGAGTAGGATGAACTTGATGATCAACGCCTCTGATCATGATTTTGCCATGATGAGACAAGGAGCTGCTACTGGCGGCGGTGGAGGTGGGATTAATTGCCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTACCCATTTGAGATGTCGGACTTGTTGTAAGAGCCGAGGGTTTCACTGTCAAACCCATGTTAAGAGTACTTGGGTTCCGGCTGCCAAGCGTCGGGAACGACAACAACAACGACAACAACAACAATTTCGACCAGATCAGTTCGATCAAACCACTCCCAAACGCCATCGAGAAACTCAACCTTCTATTCCCCCTGCCGCGGTCACCTCAGGGTTAGAACTTGCACATTTTCCAGCTGAATTCAACTCCCCAGCTGTTTTCCGCTGTGTCAAAGTCAGTGCCATTGACAATGTAGAAGAGCAATTAGCATATCAAACAGCTGTGAACATTGGTGGCCATATGTTCAAAGGCATTCTCTACGACCACGGTCCCGAAACCAGCCAGAATTTAAGCACCGGTGGTGAGAGTTCATATAGCCACGGCGGGGATGACGACGGGCAAGGCTTGGATCTAGTGATCGGAGCGTCCAATAGCTTCGGGAGAGTTAACCCATCGGCCTCATTCGTGGAGTCTTCACTATATCCTATCCCGATCAACACGTTCACCCCCGGTATGCAAAATTTCCCTTCCTCAAGAACATAA 897 47.71 MTGLLYLGGKQEDDQEQRGREQQLFLYNSRNNEEIYSKGLEIWPQYGQQHQAVENYISFGVGPSRMNLMINASDHDFAMMRQGAATGGGGGGINCQDCGNQAKKDCTHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQRQQQQFRPDQFDQTTPKRHRETQPSIPPAAVTSGLELAHFPAEFNSPAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDHGPETSQNLSTGGESSYSHGGDDDGQGLDLVIGASNSFGRVNPSASFVESSLYPIPINTFTPGMQNFPSSRT 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 491049 492559 + Cp4.1LG02g07790.1 Cpe02g00098 464047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00098 298 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 94 136 IPR006510 -
Cpe02g00098 298 MobiDBLite consensus disorder prediction 134 170 - -
Cpe02g00098 298 Pfam Domain of unknown function (DUF702) 92 230 - -
Cpe02g00098 298 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 181 229 IPR006511 -
Cpe02g00098 298 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 294 IPR007818 GO:0003700|GO:0006355
Cpe02g00098 298 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 294 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00098 Cpe07g00386 CCT
Cpe02g00098 Cpe07g00386 ECH
Cpe02g00098 Cpe11g00233 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00098 Cpe-Chr2:491049 Cpe14g00546 Cpe-Chr14:3454778 2.52E-57 dispersed
Cpe15g00256 Cpe-Chr15:2450606 Cpe02g00098 Cpe-Chr2:491049 1.76E-119 transposed
Cpe10g00646 Cpe-Chr10:3722467 Cpe02g00098 Cpe-Chr2:491049 3.21E-27 wgd
Cpe11g00233 Cpe-Chr11:1258703 Cpe02g00098 Cpe-Chr2:491049 1.05E-92 wgd
Cpe19g00837 Cpe-Chr19:6224497 Cpe02g00098 Cpe-Chr2:491049 1.50E-59 wgd
Cpe02g00098 Cpe-Chr2:491049 Cpe07g00386 Cpe-Chr7:2494578 6.08E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48973 PF05142 DUF702 8.80E-62 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00098 - - csv:101220654 381.719