Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe02g00098 | ATGACGGGGTTGTTATATTTAGGTGGTAAACAAGAGGATGATCAAGAACAAAGAGGAAGAGAGCAGCAATTGTTTTTGTACAATAGTAGAAACAACGAGGAGATCTACTCCAAGGGGTTGGAGATATGGCCACAATATGGGCAGCAGCATCAAGCGGTGGAGAATTACATTTCCTTTGGAGTGGGGCCGAGTAGGATGAACTTGATGATCAACGCCTCTGATCATGATTTTGCCATGATGAGACAAGGAGCTGCTACTGGCGGCGGTGGAGGTGGGATTAATTGCCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTACCCATTTGAGATGTCGGACTTGTTGTAAGAGCCGAGGGTTTCACTGTCAAACCCATGTTAAGAGTACTTGGGTTCCGGCTGCCAAGCGTCGGGAACGACAACAACAACGACAACAACAACAATTTCGACCAGATCAGTTCGATCAAACCACTCCCAAACGCCATCGAGAAACTCAACCTTCTATTCCCCCTGCCGCGGTCACCTCAGGGTTAGAACTTGCACATTTTCCAGCTGAATTCAACTCCCCAGCTGTTTTCCGCTGTGTCAAAGTCAGTGCCATTGACAATGTAGAAGAGCAATTAGCATATCAAACAGCTGTGAACATTGGTGGCCATATGTTCAAAGGCATTCTCTACGACCACGGTCCCGAAACCAGCCAGAATTTAAGCACCGGTGGTGAGAGTTCATATAGCCACGGCGGGGATGACGACGGGCAAGGCTTGGATCTAGTGATCGGAGCGTCCAATAGCTTCGGGAGAGTTAACCCATCGGCCTCATTCGTGGAGTCTTCACTATATCCTATCCCGATCAACACGTTCACCCCCGGTATGCAAAATTTCCCTTCCTCAAGAACATAA | 897 | 47.71 | MTGLLYLGGKQEDDQEQRGREQQLFLYNSRNNEEIYSKGLEIWPQYGQQHQAVENYISFGVGPSRMNLMINASDHDFAMMRQGAATGGGGGGINCQDCGNQAKKDCTHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQRQQQQFRPDQFDQTTPKRHRETQPSIPPAAVTSGLELAHFPAEFNSPAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDHGPETSQNLSTGGESSYSHGGDDDGQGLDLVIGASNSFGRVNPSASFVESSLYPIPINTFTPGMQNFPSSRT | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 491049 | 492559 | + | Cp4.1LG02g07790.1 | Cpe02g00098 | 464047 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe02g00098 | 298 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 94 | 136 | IPR006510 | - | |
Cpe02g00098 | 298 | MobiDBLite | consensus disorder prediction | 134 | 170 | - | - | |
Cpe02g00098 | 298 | Pfam | Domain of unknown function (DUF702) | 92 | 230 | - | - | |
Cpe02g00098 | 298 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 181 | 229 | IPR006511 | - | |
Cpe02g00098 | 298 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 294 | IPR007818 | GO:0003700|GO:0006355 | |
Cpe02g00098 | 298 | PANTHER | PROTEIN SHI RELATED SEQUENCE 7 | 1 | 294 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe02g00098 | Cpe07g00386 | CCT | |
Cpe02g00098 | Cpe07g00386 | ECH | |
Cpe02g00098 | Cpe11g00233 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g00098 | Cpe-Chr2:491049 | Cpe14g00546 | Cpe-Chr14:3454778 | 2.52E-57 | dispersed | |
Cpe15g00256 | Cpe-Chr15:2450606 | Cpe02g00098 | Cpe-Chr2:491049 | 1.76E-119 | transposed | |
Cpe10g00646 | Cpe-Chr10:3722467 | Cpe02g00098 | Cpe-Chr2:491049 | 3.21E-27 | wgd | |
Cpe11g00233 | Cpe-Chr11:1258703 | Cpe02g00098 | Cpe-Chr2:491049 | 1.05E-92 | wgd | |
Cpe19g00837 | Cpe-Chr19:6224497 | Cpe02g00098 | Cpe-Chr2:491049 | 1.50E-59 | wgd | |
Cpe02g00098 | Cpe-Chr2:491049 | Cpe07g00386 | Cpe-Chr7:2494578 | 6.08E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48973 | PF05142 | DUF702 | 8.80E-62 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe02g00098 | - | - | csv:101220654 | 381.719 |